RNA id: TU827011


Basic Information

Item Value
RNA id TU827011
length 215
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G728059
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 58981404 ~ 58981618 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaatgctacctatgaccccaagaacactatCCCACCATCAAAAatagaggtggaaacattatgctttgggggtgtttttctgctaaggggacaggacacttcaccgcatcaaagggacgatgggcggggccatgtaccatcaaatcttgggttagaacctccttccctcagccagggcactgaaaatgggtcgtggatgggtattccagcatgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU826936 lncRNA upstream 57421 58923730 ~ 58923983 (+) True G727987
TU826919 lncRNA upstream 69037 58912155 ~ 58912367 (+) True G727973
TU826248 lncRNA upstream 331888 58629167 ~ 58649516 (+) True G727338
TU826171 lncRNA upstream 466540 58512573 ~ 58514864 (+) True G727265
TU826173 lncRNA upstream 467433 58511905 ~ 58513971 (+) False G727266
TU827196 lncRNA downstream 129544 59111162 ~ 59112437 (+) True G728232
TU827254 lncRNA downstream 199401 59181019 ~ 59181305 (+) True G728281
TU827257 lncRNA downstream 202076 59183694 ~ 59183964 (+) True G728284
TU827270 lncRNA downstream 237529 59219147 ~ 59219847 (+) True G728297
TU827274 lncRNA downstream 272798 59254416 ~ 59257007 (+) False G728300
LOC118965657 mRNA upstream 308729 58672567 ~ 58672675 (+) True LOC118965657
XM_036985803.1 mRNA upstream 331426 58335194 ~ 58649978 (+) False LOC110530233
XM_036985804.1 mRNA upstream 331426 58335195 ~ 58649978 (+) True LOC110530233
XM_021613129.2 mRNA upstream 713021 58165647 ~ 58268383 (+) False LOC110530232
XM_036985805.1 mRNA downstream 75798 59057416 ~ 59084854 (+) False LOC110530235
XM_036985807.1 mRNA downstream 75798 59057416 ~ 59084854 (+) True LOC110530235
XM_021613133.2 mRNA downstream 206449 59188067 ~ 59211817 (+) True LOC110530237
XM_021613151.2 mRNA downstream 767050 59748668 ~ 59768093 (+) False LOC110530248
XM_021613150.2 mRNA downstream 767051 59748669 ~ 59768093 (+) False LOC110530248
TU827009 other upstream 133 58980931 ~ 58981271 (+) True G728057
TU826259 other upstream 307399 58646859 ~ 58674005 (+) True G727348
TU826058 other upstream 623269 58357039 ~ 58358135 (+) False G727161
TU824799 other upstream 1127772 57853012 ~ 57853632 (+) True LOC118965533
TU824655 other upstream 1425922 57554723 ~ 57555482 (+) True G725907
TU827614 other downstream 778857 59760475 ~ 59766358 (+) True LOC110530248
TU829329 other downstream 2058950 61040568 ~ 61042129 (+) True G730206
TU829420 other downstream 2177192 61158810 ~ 61159193 (+) True G730267
TU829538 other downstream 2388409 61370027 ~ 61810354 (+) False G730377
TU829598 other downstream 2448245 61429863 ~ 61468746 (+) False G730425

Expression Profile