RNA id: TCONS_00035776


Basic Information

Item Value
RNA id TCONS_00035776
length 975
RNA type mRNA
GC content 0.46
exon number 6
gene id XLOC_018148
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 29469753 ~ 29475172 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGCAAATGAAGCGTAGAGGAGGAGGACCGTCACCGCATCTCTGCTGAACCCGATATCCTCTCTCTCTGTCCGGATTACATGTGAACGTCAGAGATGGGTTCGACTTCAAAAATGACACACACGGTTTTTCTGAGTGTCATCTTCAGCCTGATAGCCGTGGTTTCTGGCCGCAGTCCACGCACTGTGGATCAGGTGTCGGAAGCGGACATCCAGCGCCTGCTTCACGGTGTAATGGAGCAGCTGGGCATCGCGCGGCCCCGGGTCGAATATCCCGCGCACCAGGCCACCAACATAGTTGGTCCTCTCAGCATCCAAGGTGGTGCTCATGAGGGGCTCCAGCATCTCGGGCCGTATGGGAACATCCCTAACATTGTAGCAGAGTTAACAGGGGACAGTGTTCCCAAAGATTTCAGCGAGGACCACGGTTATCCTGACCCTCCCAACCCTTGCCCCCTTGGAAAGACTGCTGCAGATGGGTGTTTAGAAAATTCTCCAGACACTGCAGAGTTCAGTCGAGAGTTCCAGAAACATCAGCACCTTTTTGACCCAGAGCATGACTATCCTGCACTGGCCAAGTGGAATAAAGGACTGTTGTATGAAAAACTGAAGGGTGGGCCAAAGAGAAGAAAAAGGAGTGTTCCAAATCCATATCTGATGGGACAGAGGCTGGATAACGTGGTGGCCAAGAAATCAGTGCCACATTTCCCAGAGGAGGATGAGGTTGAAACCGCTACAAGCAATATCAAGACCTGAACATCATGTTGATCATAAAATCTGTATAATCAACATAACTTATCAGTTTCACAGTAAAGTAAGCACCAAATGATGTGTGATATTCAACTGAATCATATTATTAATAGAGCAACAAATGATGATTgtataacattaatgaatattctCTTGACGCAACTTTTGTTGTAACActatataatcaaataaaatgatgTATATCTTCATGTGCAGATAATTTGAAA

Function

GO:

id name namespace
GO:0038098 sequestering of BMP from receptor via BMP binding biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005125 cytokine activity molecular_function
GO:0036122 BMP binding molecular_function
GO:0048018 receptor ligand activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1687 Predicted to enable enzyme regulator activity. Predicted to be involved in regulation of hormone secretion. Predicted to act upstream of or within neuropeptide signaling pathway. Located in motile cilium. Is expressed in central nervous system; endocrine system; and sensory system. Orthologous to human SCG5 (secretogranin V).

Ensembl:

ensembl_id ENSDART00000045249

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036478 lncRNA downstream 42344 29426938 ~ 29429462 (-) True XLOC_018147
TCONS_00036854 lncRNA downstream 607924 28860442 ~ 28863882 (-) True XLOC_018140
TCONS_00035758 lncRNA downstream 629316 28835369 ~ 28842490 (-) True XLOC_018139
TCONS_00036477 lncRNA downstream 829965 28638760 ~ 28641841 (-) True XLOC_018135
TCONS_00035738 lncRNA downstream 1176702 28284780 ~ 28295104 (-) True XLOC_018131
TCONS_00035793 lncRNA upstream 52255 29527191 ~ 29529831 (-) True XLOC_018153
TCONS_00035795 lncRNA upstream 148615 29623551 ~ 29626488 (-) False XLOC_018154
TCONS_00035796 lncRNA upstream 148622 29623558 ~ 29625984 (-) True XLOC_018154
TCONS_00036855 lncRNA upstream 212699 29687635 ~ 29689408 (-) False XLOC_018156
TCONS_00035800 lncRNA upstream 212699 29687635 ~ 29691465 (-) True XLOC_018156
TCONS_00035774 mRNA downstream 229 29469753 ~ 29471577 (-) False XLOC_018148
TCONS_00035772 mRNA downstream 51093 29268444 ~ 29420713 (-) False XLOC_018146
TCONS_00035773 mRNA downstream 53186 29269783 ~ 29418620 (-) True XLOC_018146
TCONS_00035771 mRNA downstream 241952 29228337 ~ 29229854 (-) True XLOC_018145
TCONS_00035768 mRNA downstream 419415 29036328 ~ 29052391 (-) False XLOC_018144
TCONS_00035779 mRNA upstream 1916 29476852 ~ 29482492 (-) False XLOC_018149
TCONS_00035780 mRNA upstream 2208 29477144 ~ 29483514 (-) True XLOC_018149
TCONS_00035781 mRNA upstream 17533 29492469 ~ 29498218 (-) False XLOC_018150
TCONS_00035783 mRNA upstream 17546 29492482 ~ 29499426 (-) False XLOC_018150
TCONS_00035782 mRNA upstream 17546 29492482 ~ 29499426 (-) False XLOC_018150
TCONS_00035770 other downstream 421761 29047183 ~ 29050045 (-) True XLOC_018144
TCONS_00035760 other downstream 595932 28871885 ~ 28875874 (-) False XLOC_018141
TCONS_00035753 other downstream 629235 28832762 ~ 28842571 (-) False XLOC_018139
TCONS_00035747 other downstream 859484 28611272 ~ 28612322 (-) True XLOC_018136
TCONS_00035726 other downstream 2160191 27308416 ~ 27311615 (-) True XLOC_018122
TCONS_00035788 other upstream 20364 29495300 ~ 29495435 (-) True XLOC_018151
TCONS_00035811 other upstream 897727 30372663 ~ 30372883 (-) True XLOC_018166
TCONS_00035812 other upstream 898271 30373207 ~ 30373427 (-) True XLOC_018167
TCONS_00035813 other upstream 898929 30373865 ~ 30374084 (-) True XLOC_018168
TCONS_00035814 other upstream 899750 30374686 ~ 30374906 (-) True XLOC_018169

Expression Profile

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