RNA id: TCONS_00035779


Basic Information

Item Value
RNA id TCONS_00035779
length 1558
RNA type mRNA
GC content 0.49
exon number 8
gene id XLOC_018149
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 29476852 ~ 29483514 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACCATCCTAAAAAACAGCAATCATGTGTGACGATGATGAGACTACCGCACTCGTGTGCGACAATGGTTCTGGTTTGGTCAAGGCTGGATTCGCCGGTGATGATGCTCCACGTGCTGTCTTTCCCTCTATTGTTGGCAGACCCCGTCACCAGGGTGTGATGGTTGGTATGGGTCAGAAAGACAGCTATGTGGGAGACGAGGCTCAGAGCAAGAGGGGTATCCTCACTCTTAAATACCCCATCGAGCACGGCATCATCACCAACTGGGATGACATGGAGAAGATCTGGCATCACACCTTCTACAATGAGCTGCGTGTGGCCCCTGAGGAGCATCCAACTCTGCTCACTGAGGCCCCCCTTAACCCTAAAGCCAACAGAGAGAAGATGACACAGATCATGTTTGAGACCTTCAACGTTCCCGCCATGTATGTTGCCATTCAGGCTGTGCTCTCCCTCTACGCCTCTGGCCGTACCACTGGTATTGTACTGGACTCTGGTGATGGTGTGACCCACAACGTGCCCATCTATGAGGGTTATGCTCTTCCTCATGCCATCATGCGTCTGGATCTGGCCGGTCGTGACTTGACTGACTACCTGATGAAGATCCTGACTGAGCGTGGCTACTCTTTCGTCACCACTGCCGAGCGTGAGATTGTGCGTGATATTAAGGAGAAGCTGTGCTACGTGGCTCTGGACTTTGAGAATGAGATGGCCACTGCTGCCTCCTCCTCCTCTCTGGAGAAGAGCTACGAGTTGCCTGATGGTCAGGTCATCACCATTGGAAATGAGCGTTTCCGCTGTCCTGAGACCCTCTTCCAGCCCTCTTTCATTGGTATGGAGTCCGCTGGCATCCATGAAACTGCCTACAACAGCATTATGAAGTGCGACATTGATATCCGCAAGGATCTGTATGCCAACAACGTCCTTTCTGGTGGTACCACCATGTATCCAGGTATCGCTGACCGCATGCAGAAGGAAATCACTGCTCTGGCCCCCAGCACAATGAAGATCAAGATCATTGCTCCCCCTGAACGCAAGTACTCCGTCTGGATTGGTGGCTCCATCCTGGCCTCCCTGTCCACCTTCCAGCAGATGTGGATCAGCAAACAGGAGTATGATGAGGCAGGTCCCTCCATCGTCCACAGAAAGTGCTTCTAAATCTTCAATCCTTCTCTGTTCAGTCCAACTAACCCCCCGTATGCCTTTGTACTGTGCCTTGTGCTGTATATACATGTACCGTTGTAATAAAAGTTCTGATGTGTCCATACATATTGTGTTTGATAAAGTGAATCTATAAGGTGAACTAACGACTATAGCCACTTCCATGTCATGAGGGGTGTATTTGGTCTGCAACACAATTTATAAGCATCACACCCCCCTCTACTGGCTTTTCACCGTCACACTGTGTCCTAGTGCCACATAAACGTTATATAAAAGTAACAAGACTCATAAAAGTCAATGAACCAGGCAACCTTACTGCTCTAAAGTTCAGTTCGGGCTCTTATTTTTCCACTATAGGCGCTTTCAGTAGTGGACAAGGATCATCATAGCCACTCTTA

Function

GO:

id name namespace
GO:0036302 atrioventricular canal development biological_process
GO:0003203 endocardial cushion morphogenesis biological_process
GO:0003272 endocardial cushion formation biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005869 dynactin complex cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040520-4 Acts upstream of or within atrioventricular canal development and endocardial cushion formation. Predicted to be part of dynactin complex. Is expressed in adaxial cell; brain; muscle; pericardial region; and trunk. Human ortholog(s) of this gene implicated in atrial heart septal defect 5; dilated cardiomyopathy; dilated cardiomyopathy 1R; and hypertrophic cardiomyopathy 11. Orthologous to human ACTC1 (actin alpha cardiac muscle 1).

Ensembl:

ensembl_id ENSDART00000178308

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035778 lncRNA downstream 2357 29473587 ~ 29474495 (-) True XLOC_018148
TCONS_00036478 lncRNA downstream 47390 29426938 ~ 29429462 (-) True XLOC_018147
TCONS_00036854 lncRNA downstream 612970 28860442 ~ 28863882 (-) True XLOC_018140
TCONS_00035758 lncRNA downstream 634362 28835369 ~ 28842490 (-) True XLOC_018139
TCONS_00036477 lncRNA downstream 835011 28638760 ~ 28641841 (-) True XLOC_018135
TCONS_00035793 lncRNA upstream 44699 29527191 ~ 29529831 (-) True XLOC_018153
TCONS_00035795 lncRNA upstream 141059 29623551 ~ 29626488 (-) False XLOC_018154
TCONS_00035796 lncRNA upstream 141066 29623558 ~ 29625984 (-) True XLOC_018154
TCONS_00036855 lncRNA upstream 205143 29687635 ~ 29689408 (-) False XLOC_018156
TCONS_00035800 lncRNA upstream 205143 29687635 ~ 29691465 (-) True XLOC_018156
TCONS_00035775 mRNA downstream 1680 29471151 ~ 29475172 (-) False XLOC_018148
TCONS_00035776 mRNA downstream 1916 29471806 ~ 29474936 (-) False XLOC_018148
TCONS_00035777 mRNA downstream 1993 29471819 ~ 29474859 (-) False XLOC_018148
TCONS_00035774 mRNA downstream 5275 29469753 ~ 29471577 (-) False XLOC_018148
TCONS_00035772 mRNA downstream 56139 29268444 ~ 29420713 (-) False XLOC_018146
TCONS_00035781 mRNA upstream 9977 29492469 ~ 29498218 (-) False XLOC_018150
TCONS_00035783 mRNA upstream 9990 29492482 ~ 29499426 (-) False XLOC_018150
TCONS_00035782 mRNA upstream 9990 29492482 ~ 29499426 (-) False XLOC_018150
TCONS_00035784 mRNA upstream 10027 29492519 ~ 29499426 (-) False XLOC_018150
TCONS_00035785 mRNA upstream 11072 29493564 ~ 29498219 (-) False XLOC_018150
TCONS_00035770 other downstream 426807 29047183 ~ 29050045 (-) True XLOC_018144
TCONS_00035760 other downstream 600978 28871885 ~ 28875874 (-) False XLOC_018141
TCONS_00035753 other downstream 634281 28832762 ~ 28842571 (-) False XLOC_018139
TCONS_00035747 other downstream 864530 28611272 ~ 28612322 (-) True XLOC_018136
TCONS_00035726 other downstream 2165237 27308416 ~ 27311615 (-) True XLOC_018122
TCONS_00035788 other upstream 12808 29495300 ~ 29495435 (-) True XLOC_018151
TCONS_00035811 other upstream 890171 30372663 ~ 30372883 (-) True XLOC_018166
TCONS_00035812 other upstream 890715 30373207 ~ 30373427 (-) True XLOC_018167
TCONS_00035813 other upstream 891373 30373865 ~ 30374084 (-) True XLOC_018168
TCONS_00035814 other upstream 892194 30374686 ~ 30374906 (-) True XLOC_018169

Expression Profile

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