RNA id: TCONS_00035787


Basic Information

Item Value
RNA id TCONS_00035787
length 785
RNA type mRNA
GC content 0.44
exon number 7
gene id XLOC_018150
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 29492469 ~ 29499426 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CttagttttgcttttatttatttctagttAACTTTGTTTTAGAAGTTGtctttatttttaacctttaactTATCCTCGTTTTGTTTTACCAAACACTCCAAGCTTTACAATGTCGTCCACTCGCTCTCCCCTGAAAACCAAGAATGAAAACACAATCTCTACTAAAATGAATAACATGTCCTTTGTGGACAAAGAAAACACGCCACCCAGTTTGAGCTCCACCAGAATCCTGGCGTCCAAAACGGCGCGCAAAATCTTTGATGAATCAGAGTCGAAAGCAAAGAAAGGAGCAGTGGAGGAGGAGCCTCTTCTGAAGGAGAACCCCCATCGCTTTGTCATTTTCCCAATTCAGTATCATGACATCTGGCAGATGTACAAGAAGGCAGAGGCCTCTTTCTGGACAGCTGAGGAGgtTGATCTGTCCAAAGATCTGCAACACTGGGATTCCCTGAAAGACGAGGAGAGATATTTCATCTCCCATGTTCTGGCTTTCTTTGCTGCAAGTGATGGCATTGTCAATGAGAACTTGGTGGAGCGTTTCACTCAGGAGGTCCAGGTGACTGAAGCCCGCTGCTTCTATGGCTTCCAGATAGCAATGGAAAACATCCACTCAGAAATGTACAGCCTGTTGATTGACACCTACATTAAAGATTCTAAAGAGAGGGAATTTCTGTTCAATGCCATTGAGACAATGCCATGTGTAAAGAAGAAGGCTGACTGGGCACTCAACTGGATTGGTGATAAAAATGCACGATATGGTGAGAGAGTGGTGGCCTTTGCTGCAG

Function

GO:

id name namespace
GO:0009263 deoxyribonucleotide biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0006260 DNA replication biological_process
GO:0005829 cytosol cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko00480 Glutathione metabolism
ko00983 Drug metabolism - other enzymes
ko04115 p53 signaling pathway
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-990415-25 Predicted to enable ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor. Predicted to be involved in deoxyribonucleotide biosynthetic process. Predicted to act upstream of or within DNA replication. Predicted to be located in cytoplasm and membrane. Predicted to be integral component of membrane. Predicted to be active in cytosol. Is expressed in several structures, including nervous system; pectoral fin musculature; pharyngeal arch 3-7 skeleton; proliferative region; and tail bud. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human RRM2 (ribonucleotide reductase regulatory subunit M2).

Ensembl:

ensembl_id ENSDART00000152986

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035778 lncRNA downstream 20508 29473587 ~ 29474495 (-) True XLOC_018148
TCONS_00036478 lncRNA downstream 65541 29426938 ~ 29429462 (-) True XLOC_018147
TCONS_00036854 lncRNA downstream 631121 28860442 ~ 28863882 (-) True XLOC_018140
TCONS_00035758 lncRNA downstream 652513 28835369 ~ 28842490 (-) True XLOC_018139
TCONS_00036477 lncRNA downstream 853162 28638760 ~ 28641841 (-) True XLOC_018135
TCONS_00035793 lncRNA upstream 29013 29527191 ~ 29529831 (-) True XLOC_018153
TCONS_00035795 lncRNA upstream 125373 29623551 ~ 29626488 (-) False XLOC_018154
TCONS_00035796 lncRNA upstream 125380 29623558 ~ 29625984 (-) True XLOC_018154
TCONS_00036855 lncRNA upstream 189457 29687635 ~ 29689408 (-) False XLOC_018156
TCONS_00035800 lncRNA upstream 189457 29687635 ~ 29691465 (-) True XLOC_018156
TCONS_00035780 mRNA downstream 11489 29477144 ~ 29483514 (-) True XLOC_018149
TCONS_00035779 mRNA downstream 12511 29476852 ~ 29482492 (-) False XLOC_018149
TCONS_00035775 mRNA downstream 19831 29471151 ~ 29475172 (-) False XLOC_018148
TCONS_00035790 mRNA upstream 3887 29502065 ~ 29505863 (-) True XLOC_018152
TCONS_00035791 mRNA upstream 15292 29513470 ~ 29533010 (-) False XLOC_018153
TCONS_00035792 mRNA upstream 15296 29513474 ~ 29532939 (-) False XLOC_018153
TCONS_00035794 mRNA upstream 121642 29619820 ~ 29633507 (-) False XLOC_018154
TCONS_00035798 mRNA upstream 178696 29676874 ~ 29683783 (-) False XLOC_018155
TCONS_00035770 other downstream 444958 29047183 ~ 29050045 (-) True XLOC_018144
TCONS_00035760 other downstream 619129 28871885 ~ 28875874 (-) False XLOC_018141
TCONS_00035753 other downstream 652432 28832762 ~ 28842571 (-) False XLOC_018139
TCONS_00035747 other downstream 882681 28611272 ~ 28612322 (-) True XLOC_018136
TCONS_00035726 other downstream 2183388 27308416 ~ 27311615 (-) True XLOC_018122
TCONS_00035811 other upstream 874485 30372663 ~ 30372883 (-) True XLOC_018166
TCONS_00035812 other upstream 875029 30373207 ~ 30373427 (-) True XLOC_018167
TCONS_00035813 other upstream 875687 30373865 ~ 30374084 (-) True XLOC_018168
TCONS_00035814 other upstream 876508 30374686 ~ 30374906 (-) True XLOC_018169
TCONS_00035824 other upstream 1546897 31045075 ~ 31045205 (-) True XLOC_018178

Expression Profile

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