RNA id: TU829519



Basic Information


Item Value
RNA id TU829519
length 248
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G730360
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 61322847 ~ 61323094 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGATAAAACATCCTGTTGACACAAGGTTCATATTGCTTTGTTGTTGAATGGacaaaaagagaaacaaatctttcctactgatgagtcagcAGGGTCAAcggaaggtaggctctgagggtcaggtcttgacacgttcctgaataataaagcaacacctgagggaatggcatctaaaacaattgcaaaatctttaggtgttacagggaccttgtaaagtgataagaattccttacaactgagtaaaagac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU829514 lncRNA upstream 8292 61314338 ~ 61314555 (+) True G730355
TU829502 lncRNA upstream 44258 61278339 ~ 61278589 (+) True G730343
TU829492 lncRNA upstream 59980 61253206 ~ 61262867 (+) True G730334
TU829433 lncRNA upstream 149146 61173388 ~ 61173701 (+) True G730279
TU829432 lncRNA upstream 150007 61172618 ~ 61172840 (+) True G730278
TU829512 lncRNA downstream 20311 61343405 ~ 61348640 (+) True LOC118965539
TU829570 lncRNA downstream 265273 61588367 ~ 61593191 (+) False G730401
TU829571 lncRNA downstream 265273 61588367 ~ 61589260 (+) True G730401
TU829754 lncRNA downstream 302636 61625730 ~ 61626228 (+) True G730547
TU829537 lncRNA downstream 486821 61809915 ~ 61810354 (+) True G730377
XM_036985915.1 mRNA upstream 17169 61297688 ~ 61305678 (+) False LOC110530279
XM_036985913.1 mRNA upstream 17169 61297810 ~ 61305678 (+) False LOC110530279
XM_036985914.1 mRNA upstream 17169 61297965 ~ 61305678 (+) True LOC110530279
XM_021613206.2 mRNA upstream 26678 61267865 ~ 61296169 (+) False LOC110530278
XM_021613210.2 mRNA downstream 4054 61327148 ~ 61339612 (+) True LOC110530280
XR_005052928.1 mRNA downstream 20702 61343796 ~ 61344885 (+) False LOC118965539
XM_036986879.1 mRNA downstream 47491 61370585 ~ 61375464 (+) True LOC110530952
XM_021613224.2 mRNA downstream 711521 62034615 ~ 62046177 (+) True LOC110530301
XM_021613231.2 mRNA downstream 965476 62288570 ~ 62299158 (+) False LOC110530305
TU829420 other upstream 163654 61158810 ~ 61159193 (+) True G730267
TU829329 other upstream 280718 61040568 ~ 61042129 (+) True G730206
TU827614 other upstream 1556489 59760475 ~ 59766358 (+) True LOC110530248
TU827009 other upstream 2341576 58980931 ~ 58981271 (+) True G728057
TU826259 other upstream 2648842 58646859 ~ 58674005 (+) True G727348
TU829538 other downstream 46933 61370027 ~ 61810354 (+) False G730377
TU829598 other downstream 106769 61429863 ~ 61468746 (+) False G730425
TU829628 other downstream 144259 61467353 ~ 61468047 (+) True G730447
TU829596 other downstream 145100 61468194 ~ 61468746 (+) True G730425
TU829663 other downstream 164482 61487576 ~ 61488104 (+) True G730468

Expression Profile