RNA id: TU830058



Basic Information


Item Value
RNA id TU830058
length 227
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G730819
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 62065831 ~ 62066057 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AACTAATTTATCAACATGCTTTTTGAAAGATAGCTTTTTATCAATTCAGATGCCCAGATATTCATAAGCAAGGACACGATCAATGAGGGCACCATCCAACGTGCATATGCACAAATACGCAGATACATTTTTTATGTGATTTGGAAAATCAGTAAGTACTATACCCATTTCAGTTCAACAAATAATGGAAAATTGAAGCTCTGACAGAGCCTGGTCAGCGTTGGGGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU830057 lncRNA upstream 19 62065524 ~ 62065812 (+) True G730818
TU829996 lncRNA upstream 15885 62032384 ~ 62049946 (+) True G730761
TU829983 lncRNA upstream 85141 61957389 ~ 61980690 (+) True G730752
TU829978 lncRNA upstream 122431 61942485 ~ 61943400 (+) True G730747
TU829942 lncRNA upstream 166580 61895709 ~ 61899251 (+) True G730713
TU830060 lncRNA downstream 1147 62067204 ~ 62067569 (+) True G730821
TU830049 lncRNA downstream 2077 62068134 ~ 62070889 (+) False G730813
TU830050 lncRNA downstream 2077 62068134 ~ 62070889 (+) True G730813
TU830095 lncRNA downstream 51518 62117575 ~ 62119475 (+) True G730852
TU830243 lncRNA downstream 235775 62301832 ~ 62303132 (+) True G730987
XM_021613224.2 mRNA upstream 19654 62034615 ~ 62046177 (+) True LOC110530301
XM_036986879.1 mRNA upstream 690367 61370585 ~ 61375464 (+) True LOC110530952
XR_005052928.1 mRNA upstream 720946 61343796 ~ 61344885 (+) False LOC118965539
XM_021613210.2 mRNA upstream 726219 61327148 ~ 61339612 (+) True LOC110530280
XM_036985914.1 mRNA upstream 760153 61297965 ~ 61305678 (+) True LOC110530279
XM_021613231.2 mRNA downstream 222513 62288570 ~ 62299158 (+) False LOC110530305
XM_021613229.2 mRNA downstream 222533 62288590 ~ 62299158 (+) False LOC110530305
XM_021613228.2 mRNA downstream 222534 62288591 ~ 62299158 (+) False LOC110530305
XM_036985936.1 mRNA downstream 222534 62288591 ~ 62299158 (+) False LOC110530305
XM_036985935.1 mRNA downstream 222550 62288607 ~ 62299158 (+) True LOC110530305
TU829919 other upstream 194271 61867561 ~ 61871560 (+) False G730694
TU829914 other upstream 204712 61860485 ~ 61861119 (+) True G730690
TU829843 other upstream 250221 61815071 ~ 61815610 (+) True G730629
TU829804 other upstream 369190 61696147 ~ 61696641 (+) True G730590
TU829659 other upstream 436638 61628553 ~ 61629193 (+) True G730464
TU831449 other downstream 336892 62402949 ~ 62404191 (+) True G732052
TU831769 other downstream 731644 62797701 ~ 62882948 (+) True G732350
TU832575 other downstream 1133443 63199500 ~ 63204896 (+) False LOC118965541
TU832811 other downstream 1309439 63375496 ~ 63385250 (+) False LOC110530316
TU832812 other downstream 1309439 63375496 ~ 63427667 (+) True LOC110530316

Expression Profile