RNA id: TU830243



Basic Information


Item Value
RNA id TU830243
length 498
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G730987
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 62301832 ~ 62303132 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTGTGATATCACATGACTTTGGAGCCTTTCTACTTCTTGGTATTCTTAGAGCTGTCAAAAGGCCTGATGTGTATGTCAGATGAGTTGCTTCAACACAGCTTCGCATTGATTGCCTGTAACTCTTGCTCCTTCGTTGTGCCAAGGCATTGTTGCGTGGGGTCTCCTCAGTGCTGGCAATTACGCACGAATATTCCTTTTAAATCTTGTCGAGTCCCATGAAAAGACAGTCTaaaaaagcttgttggacacttaTTTCGGTTTATTTTCTTTCGCCTACTAATAGCCTATTTGAGGAGAGATGTACGCTTGCTGAATGTAAAATAAGCTACAGCATGAACGAGCGGGGAGTAGGAAGGAGAATCCCATTTTTTCCTATAGTAGGCCCATCTTAACACCGGGCTAGATCCTAACAAAAATAGGCTTCCCATATGATTGGCCTGCTAAAAAGACAAACGGggcagtgaaaaaaaaaaaacatgatcatACATTCGGCTTTCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU830095 lncRNA upstream 182357 62117575 ~ 62119475 (+) True G730852
TU830049 lncRNA upstream 230943 62068134 ~ 62070889 (+) False G730813
TU830050 lncRNA upstream 230943 62068134 ~ 62070889 (+) True G730813
TU830060 lncRNA upstream 234263 62067204 ~ 62067569 (+) True G730821
TU830058 lncRNA upstream 235775 62065831 ~ 62066057 (+) True G730819
TU831390 lncRNA downstream 58505 62361637 ~ 62361989 (+) True G731993
TU831392 lncRNA downstream 59967 62363099 ~ 62363301 (+) True G731995
TU831401 lncRNA downstream 67178 62370310 ~ 62370540 (+) True G732004
TU831404 lncRNA downstream 68644 62371776 ~ 62372044 (+) True G732007
TU831447 lncRNA downstream 98601 62401733 ~ 62401960 (+) True G732050
XM_021613231.2 mRNA upstream 2674 62288570 ~ 62299158 (+) False LOC110530305
XM_021613229.2 mRNA upstream 2674 62288590 ~ 62299158 (+) False LOC110530305
XM_021613228.2 mRNA upstream 2674 62288591 ~ 62299158 (+) False LOC110530305
XM_036985936.1 mRNA upstream 2674 62288591 ~ 62299158 (+) False LOC110530305
XM_036985935.1 mRNA upstream 2674 62288607 ~ 62299158 (+) True LOC110530305
XM_036985946.1 mRNA downstream 318113 62621245 ~ 62827290 (+) False LOC110530308
XM_036985947.1 mRNA downstream 318113 62621245 ~ 62837405 (+) False LOC110530308
XM_036985940.1 mRNA downstream 318133 62621265 ~ 62881609 (+) False LOC110530308
XM_021613237.2 mRNA downstream 318134 62621266 ~ 62881609 (+) False LOC110530308
XM_036985939.1 mRNA downstream 318134 62621266 ~ 62881609 (+) False LOC110530308
TU829919 other upstream 430272 61867561 ~ 61871560 (+) False G730694
TU829914 other upstream 440713 61860485 ~ 61861119 (+) True G730690
TU829843 other upstream 486222 61815071 ~ 61815610 (+) True G730629
TU829804 other upstream 605191 61696147 ~ 61696641 (+) True G730590
TU829659 other upstream 672639 61628553 ~ 61629193 (+) True G730464
TU831449 other downstream 99817 62402949 ~ 62404191 (+) True G732052
TU831769 other downstream 494569 62797701 ~ 62882948 (+) True G732350
TU832575 other downstream 896368 63199500 ~ 63204896 (+) False LOC118965541
TU832811 other downstream 1072364 63375496 ~ 63385250 (+) False LOC110530316
TU832812 other downstream 1072364 63375496 ~ 63427667 (+) True LOC110530316

Expression Profile