RNA id: TU833645


Basic Information

Item Value
RNA id TU833645
length 1464
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G734104
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 63985328 ~ 63987090 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGGGTTTGAATTCAGTCATAAACCtttcatttctttattttttgtcAGCATACATCAATACAGACATCACAGGATACATAGTTTTACAAATACAAAGCACACCACCTTGCTGTGGGGTAGTGTTCAGTCACTGGGCTTTGGCAATCAGTTGGCCAACCCAACATGGCGGCCCACTCCTCTTTTCCCTTACAGATGGGAAGGACCTACCGTTACGAGTTGCCATGGTGGAGCCTTTGCTGGGTAGCACAATGGAAGGAACACTCAAACATTTCTGGAGGAGAAGCATTTTATGGGGCTTTATCAGAGCGGAGGACAAAACAGAAAACCAAAGTGATTAGTAAAGTTATATGATCAAAAACTGAGGTGGGAGGTGGAGGTTAACTCAACTGCGTTCCAGGTTGCGATTTTGAAAATAGCTGTTTGGCCAGCGTTGCAGCTCTGTACAATTCAAAGCCATCATCTCTCCTAGTCTAGGGTTAGAGCCATTTGAATCTTTACATTCcattaaactaaataaaaataaacatcatCTTCTTGCTTTAGGTTTACATCTTCTACAGATGTTACTGTATAGTTTAATGAAAAATGTACACCATCTAAACCTTGAATTTCTAATTGAGtagtttattattattactttaaaTGTATTCCTGTACAATGAAATAGAACTTCAACCTCAACCTCAAGATGACAAAATTGGTTTAAAAATACAGAGGGCTTTCTTTTTGTCCATtttttaaacccCCCCCTTACCAAGTCTTCAAGCAGGGTGCGACTACCGGTGGTCAGCTTAATATCTAGCTTGGCTGAGGGGGGTTTTCCACACAGAGGGAGTTACACCACCACCTCCTGCCACCTGAACACACCTCTCCGCAGGGATGATGGTGCTCAGTGAGTAACACAGCAGTGTGAAGATGGGTCATCGGAGCTACAGGATCAAAAAACACAGAACCAGAAGTGTCAGCCAGGGTGGAGGGTATCTGACTGGACTAGACCACTCACCACTAGAGGGCAGGGTGGAGGGTATCTGACTGGACTAGACCAcccaccaccagagggcatctgaCTGGATAGATCGTCCACCACTAGAGGGCAGGGTGGAGGGAGCCAGTGAGGGGTGGTTGGTTAGTCATTCTGAGAACACTCGGTCATAATGAACTACTTGGTTAGGTTCTGTTCCAatgtttggttggttggttgatcaGTCAGTCCTCCCCTGGTCTGAAGAGTCATTCAATACATCAGTAATCTCTCTAAGCTCTGAAGGGGCTTCACAAACCCAGGCTCACGTAAGGTCAACAAAAACAAATACTGAGAGAGCAAATGGAAATATGAGGAacaaatggagggaggaggggatggaggtgtAGGCCGGTCAGGGCAGGCGCCATCTTCTTCACATGTAGACGCGCCTTAGATCTCCTGGCGATGTGATGGTGTTGCATTGTGGGCACAGTTTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU833587 lncRNA upstream 52133 63932646 ~ 63933195 (+) True G734048
TU833201 lncRNA upstream 181943 63802729 ~ 63803385 (+) True G733697
TU833234 lncRNA upstream 187362 63797726 ~ 63797966 (+) True G733730
TU833233 lncRNA upstream 187959 63797141 ~ 63797369 (+) True G733729
TU833230 lncRNA upstream 193621 63791412 ~ 63791707 (+) True G733726
TU833677 lncRNA downstream 53617 64040707 ~ 64040929 (+) True G734136
TU833678 lncRNA downstream 57423 64044513 ~ 64045112 (+) True G734137
TU833681 lncRNA downstream 65241 64052331 ~ 64052652 (+) True G734140
TU833684 lncRNA downstream 67548 64054638 ~ 64054915 (+) True G734143
TU833689 lncRNA downstream 76898 64063988 ~ 64064191 (+) True G734148
XM_021613266.2 mRNA upstream 182765 63778335 ~ 63802563 (+) True ccdc24
XM_021613255.2 mRNA upstream 224814 63613362 ~ 63760514 (+) True LOC110530319
XM_021613256.2 mRNA upstream 372608 63603198 ~ 63612720 (+) True atp6v0b
XR_005052929.1 mRNA upstream 423568 63559656 ~ 63561760 (+) False LOC118965542
XM_021613249.2 mRNA upstream 518918 63435359 ~ 63466410 (+) False ptch2
XM_021613277.2 mRNA downstream 315391 64302481 ~ 64336545 (+) False LOC110530325
XM_021613278.2 mRNA downstream 315391 64302481 ~ 64336545 (+) False LOC110530325
XM_036985967.1 mRNA downstream 315391 64302481 ~ 64336545 (+) False LOC110530325
XM_021613275.2 mRNA downstream 315393 64302483 ~ 64336545 (+) False LOC110530325
XM_021613276.2 mRNA downstream 315393 64302483 ~ 64336545 (+) True LOC110530325
TU833063 other upstream 436585 63547587 ~ 63548743 (+) True G733571
TU832812 other upstream 557661 63375496 ~ 63427667 (+) True LOC110530316
TU832811 other upstream 600078 63375496 ~ 63385250 (+) False LOC110530316
TU832575 other upstream 780432 63199500 ~ 63204896 (+) False LOC118965541
TU831769 other upstream 1102380 62797701 ~ 62882948 (+) True G732350
TU834206 other downstream 559190 64546280 ~ 64551140 (+) False LOC110530334
TU834286 other downstream 631950 64619040 ~ 64620007 (+) False G734690
TU834284 other downstream 632085 64619175 ~ 64620007 (+) True G734690
TU834343 other downstream 710223 64697313 ~ 64697869 (+) False LOC110530343
TU834687 other downstream 834525 64821615 ~ 64822045 (+) True G735047

Expression Profile