RNA id: TU834203


Basic Information

Item Value
RNA id TU834203
length 2721
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G734622
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 64498232 ~ 64500952 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGTTGGCAATGTTACTCTGCTAGGTAAAGACTGCAGAGGGGGGTTTTTGTCTGAATACAAAAACGTTTGAAAAAGATTATGATAATGATGAAAAAACATTGAGGTGGCAAATAATGAAAAACCAAATGATGTATAGGGTATTTTGAGCCAGGGAATGATGTCTGCTGTGGTGAGATACGAGTGGTTTTTGAAGGAAAGAAAACCTGTCATTCCAAAAAACACTGACGCACATAGTGTTGACTTACTGTTATACCTCGATCGTATTCCAAGGGTCAGCTTTAAACTTTTCCTGTTAAAAGGCCTCATGTGTGGAGGAGGTGGAATGCTGAACTTGGATGTGTCAGGTCCAGGAGCCAAGCCTAAATATGCCAGACTCATCAGGTACATACAGAGTCCTCCTCACATATCTCTCACATATTCTCTACCACCTTTCCTGAGTGTAGCCTGATCCATTTGTCTGGTATCTCCTATTTCTAGTGAAGGTACCATTCAAAAAGAGACcgatgtacagagagagagagagagagagagaccggttGCGGCAGATTGGTATTTGGATTCGATCACAGAAAGATGGATTGACTGGCCTGAGAGTGATACTGCCACTGTGGGTTTGGGTCTGTGAGGAGTGGCTTGTGTTGTCAGAGTTTGGGTTTATAACATGTGGAAATACCATTGCTGAAAAACATCTTGTATCTTTCAAAGCAAAACGTGTATGAACGTGTACTTTTTGACAACATGCCTTGGTGTAGCCGGTTGGGGTTAGTATTCCACATACAAGCCTAACCAGAACTATCAACCTCTCAGACCCTGTGGGGAAAGTTTTATATTAGCCATAGTATTATTGTTATACAAGCACTTCACAAATGTCATGTACTCTCGACACCATTCTGTCTGCTTGAGCAATTATTTATCGATCGTTAGAATCATCTGTGTGTGAATGAGTACTAGGAATACAAACAGCATAGCTATATTTAACATGCACAAATAGGAATATTAGACACAAACATTTGAGGATAAATGTTGAGGCTATGAAAAGCGTTCCATGTCAGCTTCCACATTCCAGGTGACCTCGGGCCACAGAAGTCCACCGTCTGTCTGGCGTAGTGCAGTAAAGAAACGACgacagaaaagagaaaagagatgCTCAACTCAGTTCTCAGGGAATCACTTaaagaaacaaaaacaacaaaaaaaaagtagtAGCATAAGCATTTAAGATATTGTAAATATGAAAGTGTCAATTAAGAAAATTGTAAAGTTATAATTATTTATGATaactgtgtgtttttgtttttgtgggATACTTGAATGTGTTGTGGGCTGGGAATGTGAGGGCAGTTAGATGAAAATACATTTCTCAGGTGCTCCTGTGTACATTTCTCTGAATTTTGAGTcggtttttttttttatttgtatgttttgtttagtttttgCAGTGTTTTCTAAGAGGAAGCATGTTATTTCGAAATTAGAAAAGCAGGCATACCATTATGAAAAGAAAGCAACCTGACTATGCAGAAACCACTTGGTGGTTTGGTCCCCTTCTCTGGAGTCACCCAGACGAATGTCTGAGGGGGGCTCGCCACTATCCTAAAGAGAACAGACGAGGCAAGACACGGCATGTTTGTATTTGTAAGTAGCCTGCACATGCTGCAAATTGGGACGGACGTTGCCTTTGACCAATTTAATGTACAATTTCTCTCTTTGGACTTAAGCCTTTAGTGTCTTCTCAAAGTACCCGTGTCAGCACTTGACATGGTAACGAGAGTTTAAGGAGAACAATGGtccaaaataaatgaaaataaaaaccCTGCATGCCCCACGCAAAATAAGGAACTGGCAGAGAATATGAGTGGGGGAGTCTGTTTTGCCAACCCCTATCGTCCTCCCTTGTATTTCTTCATGCTTTTAAGCCTATTCAGTTCACTTCACCTGAACGACCATGGCCATGCTCTTAACCATTCTCTACAACCCCTACGGAGCAGTTGACTTATTCtgctccttccttccatccatcgCTGGTCTTTATTCCTTCTCTTTTAAAAAGATTTAGTTAACTTCCTCCCAAACGTTAGTCACAGGATTCAGTAAGACTGCAGCACTGCCTGTACCAGTGCCATATGCACCACGACATAACACCTGCTTTCCAAACCAACCTACCAACCTACGGCAGCCTCCTCTGTTTTGTCATTCACTTAGCTGCCACAAATATTAACCACTACTTGAATCTGAGATTTGTGAGTTACAACGAGTGGACAAAACAAGATTGCAGTTTAATGTCAACCTGCCTGTTATATACACACGTCAAACAGCAAGCATTTTCTGTCGCTGAAGTAGTTGGTTCTACGGCATTGCAAAAAAAGTAGGAGGGAAACTCCTCTGGCTTTTAATTTCTCTCTCCCATACTCTGTGTCTGTGTTAACTGTACCAGTGTTTTGACCTGTCACTAGAATTTAGAAGGAAGTAATAATAATCACTGGTAGATTGTTCACTAGTTCATCTACGGTTtgattctttttttatttaagGGAAAGTGTTTGTTGCCTCTTTGTGCTActgatttataaaaaataaaaaaaggtatcCAGTATTTGTTGCCACAGAAGTATAGTTTATCAACAGTTTGTGCAACCTCTTGAGCTAATGTCTATAAAACAATTTATTACTATTTATGTAACGCTACTACCATTTTATATCATTTGTGTTGGAATCTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU834002 lncRNA upstream 225223 64272706 ~ 64273009 (+) True G734443
TU833963 lncRNA upstream 253218 64244750 ~ 64245014 (+) True G734408
TU833689 lncRNA upstream 434041 64063988 ~ 64064191 (+) True G734148
TU833684 lncRNA upstream 443317 64054638 ~ 64054915 (+) True G734143
TU833681 lncRNA upstream 445580 64052331 ~ 64052652 (+) True G734140
TU834234 lncRNA downstream 1394 64502346 ~ 64502780 (+) True G734642
TU834218 lncRNA downstream 10606 64511558 ~ 64565673 (+) True G734627
TU834207 lncRNA downstream 45726 64546678 ~ 64551340 (+) True LOC110530334
TU834252 lncRNA downstream 70166 64571118 ~ 64571356 (+) True G734660
TU834256 lncRNA downstream 74743 64575695 ~ 64576076 (+) True G734664
XM_021613289.2 mRNA upstream 82 64433105 ~ 64498150 (+) False zswim5
XM_021613287.2 mRNA upstream 82 64433106 ~ 64498150 (+) False zswim5
XM_021613288.2 mRNA upstream 192 64433184 ~ 64498040 (+) True zswim5
XM_021611266.2 mRNA upstream 139528 64351669 ~ 64358704 (+) True elovl8a
XM_021613285.2 mRNA upstream 148351 64346751 ~ 64349881 (+) False selenop2
XM_021613295.2 mRNA downstream 46728 64547680 ~ 64551206 (+) False LOC110530334
XM_021613296.2 mRNA downstream 46728 64547680 ~ 64551206 (+) False LOC110530334
XM_021613298.2 mRNA downstream 46728 64547680 ~ 64551206 (+) False LOC110530334
XM_021613299.2 mRNA downstream 47896 64548848 ~ 64551206 (+) False LOC110530334
XR_005052931.1 mRNA downstream 97164 64598116 ~ 64599550 (+) False LOC118965544
TU833063 other upstream 949489 63547587 ~ 63548743 (+) True G733571
TU832812 other upstream 1070565 63375496 ~ 63427667 (+) True LOC110530316
TU832811 other upstream 1112982 63375496 ~ 63385250 (+) False LOC110530316
TU832575 other upstream 1293336 63199500 ~ 63204896 (+) False LOC118965541
TU831769 other upstream 1615284 62797701 ~ 62882948 (+) True G732350
TU834206 other downstream 45328 64546280 ~ 64551140 (+) False LOC110530334
TU834286 other downstream 118088 64619040 ~ 64620007 (+) False G734690
TU834284 other downstream 118223 64619175 ~ 64620007 (+) True G734690
TU834343 other downstream 196361 64697313 ~ 64697869 (+) False LOC110530343
TU834687 other downstream 320663 64821615 ~ 64822045 (+) True G735047

Expression Profile