RNA id: TCONS_00036857


Basic Information

Item Value
RNA id TCONS_00036857
length 281
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id XLOC_018160
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 29927185 ~ 29933758 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGGACCTGCAGGCTTCTGGCACATGAAGAATCACTGGAGCATATGTCGCCagcatgattcattcatttaaatttatgGAGTGGAAGTGGGCCAGGTAGCGCACCGCAGCAACTGTCAACAGCACCTCCATCTTCACACACTTCACATACACCCGTCCCACCATCCTACCATATGTCCCGCGAACACACCATTTCTAATGGACAAGGACAGCTGTATCAGAGCATTACATCATTGCGAGGGACAGCAGAGCCAATCAACAGCCTGGCATGATTATGCAGCAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036856 lncRNA downstream 92647 29789942 ~ 29834538 (-) True XLOC_018158
TCONS_00035800 lncRNA downstream 235720 29687635 ~ 29691465 (-) True XLOC_018156
TCONS_00036855 lncRNA downstream 237777 29687635 ~ 29689408 (-) False XLOC_018156
TCONS_00035795 lncRNA downstream 300697 29623551 ~ 29626488 (-) False XLOC_018154
TCONS_00035796 lncRNA downstream 301201 29623558 ~ 29625984 (-) True XLOC_018154
TCONS_00036479 lncRNA upstream 99800 30033558 ~ 30035310 (-) True XLOC_018161
TCONS_00036480 lncRNA upstream 158501 30092259 ~ 30099019 (-) True XLOC_018162
TCONS_00036858 lncRNA upstream 189732 30123490 ~ 30257999 (-) False XLOC_018163
TCONS_00036481 lncRNA upstream 189743 30123501 ~ 30187184 (-) False XLOC_018163
TCONS_00036859 lncRNA upstream 212416 30146174 ~ 30201114 (-) False XLOC_018163
TCONS_00035803 mRNA downstream 62655 29836276 ~ 29864530 (-) False XLOC_018159
TCONS_00035804 mRNA downstream 62795 29836278 ~ 29864390 (-) True XLOC_018159
TCONS_00035802 mRNA downstream 139975 29784930 ~ 29787210 (-) True XLOC_018157
TCONS_00035801 mRNA downstream 139993 29784927 ~ 29787192 (-) False XLOC_018157
TCONS_00035798 mRNA downstream 243402 29676874 ~ 29683783 (-) False XLOC_018155
TCONS_00035805 mRNA upstream 98870 30032628 ~ 30035326 (-) False XLOC_018161
TCONS_00035806 mRNA upstream 421678 30355436 ~ 30370884 (-) False XLOC_018164
TCONS_00035807 mRNA upstream 427395 30361153 ~ 30369598 (-) False XLOC_018164
TCONS_00035809 mRNA upstream 438594 30372352 ~ 30377221 (-) False XLOC_018165
TCONS_00035810 mRNA upstream 438595 30372353 ~ 30376433 (-) True XLOC_018165
TCONS_00035788 other downstream 431750 29495300 ~ 29495435 (-) True XLOC_018151
TCONS_00035770 other downstream 877140 29047183 ~ 29050045 (-) True XLOC_018144
TCONS_00035760 other downstream 1051311 28871885 ~ 28875874 (-) False XLOC_018141
TCONS_00035753 other downstream 1084614 28832762 ~ 28842571 (-) False XLOC_018139
TCONS_00035747 other downstream 1314863 28611272 ~ 28612322 (-) True XLOC_018136
TCONS_00035811 other upstream 438905 30372663 ~ 30372883 (-) True XLOC_018166
TCONS_00035812 other upstream 439449 30373207 ~ 30373427 (-) True XLOC_018167
TCONS_00035813 other upstream 440107 30373865 ~ 30374084 (-) True XLOC_018168
TCONS_00035814 other upstream 440928 30374686 ~ 30374906 (-) True XLOC_018169
TCONS_00035824 other upstream 1111317 31045075 ~ 31045205 (-) True XLOC_018178

Expression Profile

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