RNA id: TU834286



Basic Information


Item Value
RNA id TU834286
length 968
RNA type TUCP
GC content 0.53
exon number 1
gene id G734690
representative False

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 64619040 ~ 64620007 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TAACAGTAGACCCTCTTGGGCATGATGGGAGCTAAGTGTAGGCTATGAGGTACGTGCAGTCAGAAGTTAACACACGTAGGCTAATGGGCTGCAACTCTCTTCATTCCAAAGAGCATATCAAACGCTTACCTCCATATCTGTCCAAGCTGCAAGATGTGGGTGACGGATTGCGCGGACCATATGAATACTGAACAGGACGCCGACCTTTTCTTATTAGTCGGGGTTGCcgtgctgctgttgctgttggtTGTGGTGTTGCTCTTGCTCGCGGTGGACGCCTGTCTTTGAGGTGTGGACGGTTGGGCGCCCACATCTCCATGTGAAGCAGAACCGCTCAGCAGCTTCCCGTCCATGTGGGATGAGCAGTTTGCCGCACCGGTGGCATTGGAGCCCTCGTCGGTGCTGAAATCGTGGACGAACCACCGAAAACTAAAGACTTGGACGGAGAACGACCCTAGCACAACAAAAAATAGCGTGAGCCCGAACCACCAGTAGTCGCGACGGAGGTAATAGTCGACAGAAAGCCAAATGTCGGTGCCTACATCGGCGAAATACACCACCACTGCAGCGAGAATCCATAGACAGTCCCATATCGTGTATTTTGTTTGCTGCTCTCTGCCAAGGCGAAGACATGTCGAATTAGAACCACAGCACCGTGATTCCCCATTCACGAATTCCCCATCCCCGGTTCCCGAATCCGGCTGCGATCCTGGAACGAGTCCCTGTACTGAGCCTGAGTGGTCCGAATTCTGCAAAGGCGTGAACGCTACATCGCTCTTTCTAATTTTTAATACCCCATCAGATTTAGCGGCCATTATCGTAGCTTTTTCTTTCTCCTCCAGCCAACACCGTCTTTTCTCCTCCCGTTTTCTTGTCTCCCCCTCGGCTTCTGTGTTCCAGGCGAAGAGATACTGGGCTGGGCGACCTCCTCTTCCGCCAGCTACAGCGCCGCCTGTTCATAACAAAGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU834283 lncRNA upstream 2193 64616615 ~ 64616847 (+) True G734689
TU834278 lncRNA upstream 4714 64613811 ~ 64614326 (+) True G734685
TU834274 lncRNA upstream 17184 64601551 ~ 64601856 (+) True G734681
TU834271 lncRNA upstream 19553 64598087 ~ 64599487 (+) True LOC118965544
TU834266 lncRNA upstream 28617 64590118 ~ 64590423 (+) True G734674
TU834344 lncRNA downstream 77982 64697989 ~ 64698192 (+) True LOC110530343
TU834280 lncRNA downstream 91923 64711930 ~ 64712842 (+) True G734686
TU834385 lncRNA downstream 138506 64758513 ~ 64760663 (+) True G734781
TU834412 lncRNA downstream 178357 64798364 ~ 64798583 (+) True G734805
TU834686 lncRNA downstream 200288 64820295 ~ 64820583 (+) True G735046
XR_005052931.1 mRNA upstream 19490 64598116 ~ 64599550 (+) False LOC118965544
XM_021613295.2 mRNA upstream 67834 64547680 ~ 64551206 (+) False LOC110530334
XM_021613296.2 mRNA upstream 67834 64547680 ~ 64551206 (+) False LOC110530334
XM_021613298.2 mRNA upstream 67834 64547680 ~ 64551206 (+) False LOC110530334
XM_021613299.2 mRNA upstream 67834 64548848 ~ 64551206 (+) False LOC110530334
XM_021613305.2 mRNA downstream 21114 64641121 ~ 64644702 (+) True buc
XM_021613306.2 mRNA downstream 29551 64649558 ~ 64653404 (+) False LOC110530338
XM_021613308.2 mRNA downstream 29554 64649561 ~ 64653404 (+) False LOC110530338
XM_021613307.2 mRNA downstream 29563 64649570 ~ 64653472 (+) False LOC110530338
XM_021613309.2 mRNA downstream 29715 64649722 ~ 64653404 (+) True LOC110530338
TU834206 other upstream 67900 64546280 ~ 64551140 (+) False LOC110530334
TU833063 other upstream 1070297 63547587 ~ 63548743 (+) True G733571
TU832812 other upstream 1191373 63375496 ~ 63427667 (+) True LOC110530316
TU832811 other upstream 1233790 63375496 ~ 63385250 (+) False LOC110530316
TU832575 other upstream 1414144 63199500 ~ 63204896 (+) False LOC118965541
TU834343 other downstream 77306 64697313 ~ 64697869 (+) False LOC110530343
TU834687 other downstream 201608 64821615 ~ 64822045 (+) True G735047
TU834704 other downstream 210617 64830624 ~ 64830903 (+) True G735064
TU835130 other downstream 704928 65324935 ~ 65348497 (+) True si:ch211-207d6.2
TU835205 other downstream 782216 65402223 ~ 65403099 (+) True G735512

Expression Profile