RNA id: TU834385


Basic Information

Item Value
RNA id TU834385
length 1573
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G734781
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 64758513 ~ 64760663 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCACATTTAGTTGTACAACTCCAAAATACATCAAAAACAGATATTGGTTGGATGCTTGTGTTTCAACAATATTAATTCAGCATGTGTCCTATATATATTTGGTACAAAGAAAATCACAACATAAAAAGTAAAGTAGTACATCATGAACATCAGCTATGCTCTCAAATCACTGCCACAAAGCACAGTTTCAACCACAGTATATACCATTATTTAGTCAAACAATTTTACAGAGAAAAGTTTGATGTCAAATCAGAATGATGTACCCAAATACCCAACACATCATTATCCACAAACACTTTCAAAGTCGAAGCGCAGATCAGTTGTAATTGATCCTTTGGATCCCGTCTCAACTTCTTTAATGATGAAGTTGTTTTGGAGTGATTGCTTATGTTCGCTTAGCTACTAAGTATGATATGAGTTCAGAGAGTGAAAAGCATTATCATCCAATgttGTTCCATAAACTTTCATgaagaaatgttttattttggtCCTGGGCTTTCCTGCCTTTTAAAGTATTTggccattttaaaataaggtaCGAAGAATTACCTAAAGAGATGTTCAATTCCAGTTCCTTGTTCCTGGAAAAGCAAAGTTCAAATTCACTAAAACACTCAAATATACAAAGTACAACATACTGCACTTCAGTAACAGTACAGGGAAACTATAGGAGATATCTCTCAAGAATACACAGAATTATTCAGAGAAATGTGTAATCCCTTCCAATGCAGCATATAGATACAGATGTAACcagaaaataaaaatacatgtatatatttatagTTTATTTTGACATTGAACTCAGGATCATTAACTGAAGTTCACCTTCTCTGGAAAAGTTGGCCTTGcattaaaatagtaaaaaaaaagatTCCACACAGCTGCACAGTCTCTATCTGGTCTGGCCATCAGAAAGAGCTATGGCCTATAATTGCGTTGGAAGAAATAAAAGGGCACTTTGTAAAAAACTCGGGCTGCAACATTTGTCCTCATTTTCTGAGAAGAGAGATTACAGTCAGTTATAGTTCATAGTTCATCCTCCTAGCTCCGGCCCCAGAAACAGGTCAGGTAGTGTGTTAGGAGTCACGGTCGCTGTCCTCAGCCCCGTACATGTCAGCCAGTTTCCTGAAGCGGGGCCCCCAGTCACTGAGGTAGTTGTAGTCCTGGTCCCCTTCAGAGGAAGCTGACCCCAGGGAGCTGAGAGACTCAGCCACTGAACCGGTTCCCTCGTAGGCATATGTGGCCAGAGAGTCATAAGGGGGGGCGGTGGGGTTATTGTCGTTATCCTGCACCCGCTGGTTTATGAAGTCCCGGACATCGGCGTTGTCCCGCGATGGAatgactgtctgtctgagaggGGGGTACAGAGTGTCCGAGGGGATGATGTCCCGCCTCTGCTTGCTCTCCTCGATGGCTTCGGGGTTACGCAGAGCCCCGATGTCGAAGGCTTGGGTGTCCTCCTCTCCGCCCCCCTCGTCGTTGTAGCTGACGACGTTGTCTCGCACGTCCTCTTTAGAGATGATCAGAGGCTCCTTTTTCTTCTGCTTCTTCAGTGCCGCAAACAGAACTATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU834280 lncRNA upstream 45671 64711930 ~ 64712842 (+) True G734686
TU834344 lncRNA upstream 60321 64697989 ~ 64698192 (+) True LOC110530343
TU834283 lncRNA upstream 141666 64616615 ~ 64616847 (+) True G734689
TU834278 lncRNA upstream 144187 64613811 ~ 64614326 (+) True G734685
TU834274 lncRNA upstream 156657 64601551 ~ 64601856 (+) True G734681
TU834412 lncRNA downstream 37701 64798364 ~ 64798583 (+) True G734805
TU834686 lncRNA downstream 59632 64820295 ~ 64820583 (+) True G735046
TU834805 lncRNA downstream 130286 64890949 ~ 64891233 (+) True G735164
TU834874 lncRNA downstream 186193 64946856 ~ 64947056 (+) True G735230
TU834855 lncRNA downstream 199395 64960058 ~ 64960351 (+) True cdh12a
XM_021613317.2 mRNA upstream 59987 64697289 ~ 64698526 (+) False LOC110530343
XM_036985972.1 mRNA upstream 90559 64666444 ~ 64667954 (+) False LOC110530342
XM_021613322.2 mRNA downstream 199521 64960184 ~ 64994487 (+) False cdh12a
XM_021613325.2 mRNA downstream 247224 65007887 ~ 65086822 (+) False cdh18a
XM_021613326.2 mRNA downstream 275338 65036001 ~ 65086822 (+) False cdh18a
XM_036985977.1 mRNA downstream 275343 65036006 ~ 65086822 (+) False cdh18a
XM_021613324.2 mRNA downstream 275345 65036008 ~ 65086822 (+) True cdh18a
TU834343 other upstream 60644 64697313 ~ 64697869 (+) False LOC110530343
TU834286 other upstream 138506 64619040 ~ 64620007 (+) False G734690
TU834284 other upstream 138506 64619175 ~ 64620007 (+) True G734690
TU834206 other upstream 207373 64546280 ~ 64551140 (+) False LOC110530334
TU833063 other upstream 1209770 63547587 ~ 63548743 (+) True G733571
TU834687 other downstream 60952 64821615 ~ 64822045 (+) True G735047
TU834704 other downstream 69961 64830624 ~ 64830903 (+) True G735064
TU835130 other downstream 564272 65324935 ~ 65348497 (+) True si:ch211-207d6.2
TU835205 other downstream 641560 65402223 ~ 65403099 (+) True G735512
TU835317 other downstream 838722 65599385 ~ 65601897 (+) True LOC110530360

Expression Profile