RNA id: TU834874


Basic Information

Item Value
RNA id TU834874
length 201
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G735230
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 64946856 ~ 64947056 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggtaattgaggtaatatgtacatgtaggtacagtaactatgcatagataataacacagagtagcagcggtgtaaaagggggagggcaatgcaaatagtctgggtagccatttgattagatgttcaggagtcttatggcttcggggtagaagctgtttagaagtctcttggacctagacttgatgctccggtaccgcttac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU834805 lncRNA upstream 55623 64890949 ~ 64891233 (+) True G735164
TU834686 lncRNA upstream 126273 64820295 ~ 64820583 (+) True G735046
TU834412 lncRNA upstream 148273 64798364 ~ 64798583 (+) True G734805
TU834385 lncRNA upstream 186193 64758513 ~ 64760663 (+) True G734781
TU834280 lncRNA upstream 234014 64711930 ~ 64712842 (+) True G734686
TU834855 lncRNA downstream 13002 64960058 ~ 64960351 (+) True cdh12a
TU834886 lncRNA downstream 14939 64961995 ~ 64962220 (+) True G735242
TU834887 lncRNA downstream 15243 64962299 ~ 64962601 (+) True G735243
TU834976 lncRNA downstream 111102 65058158 ~ 65130552 (+) False G735303
TU834978 lncRNA downstream 182914 65129970 ~ 65142590 (+) True G735303
XM_021613317.2 mRNA upstream 248330 64697289 ~ 64698526 (+) False LOC110530343
XM_036985972.1 mRNA upstream 278902 64666444 ~ 64667954 (+) False LOC110530342
XM_021613322.2 mRNA downstream 13128 64960184 ~ 64994487 (+) False cdh12a
XM_021613325.2 mRNA downstream 60831 65007887 ~ 65086822 (+) False cdh18a
XM_021613326.2 mRNA downstream 88945 65036001 ~ 65086822 (+) False cdh18a
XM_036985977.1 mRNA downstream 88950 65036006 ~ 65086822 (+) False cdh18a
XM_021613324.2 mRNA downstream 88952 65036008 ~ 65086822 (+) True cdh18a
TU834704 other upstream 115953 64830624 ~ 64830903 (+) True G735064
TU834687 other upstream 124811 64821615 ~ 64822045 (+) True G735047
TU834343 other upstream 248987 64697313 ~ 64697869 (+) False LOC110530343
TU834286 other upstream 326849 64619040 ~ 64620007 (+) False G734690
TU835130 other downstream 377879 65324935 ~ 65348497 (+) True si:ch211-207d6.2
TU835205 other downstream 455167 65402223 ~ 65403099 (+) True G735512
TU835317 other downstream 652329 65599385 ~ 65601897 (+) True LOC110530360
TU835372 other downstream 719810 65666866 ~ 65668095 (+) True LOC110530364
TU836376 other downstream 1177152 66124208 ~ 66125338 (+) True si:ch211-106n13.3

Expression Profile