RNA id: TU834886


Basic Information

Item Value
RNA id TU834886
length 226
lncRNA type intronic
GC content 0.41
exon number 1
gene id G735242
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 64961995 ~ 64962220 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCAgtctagcaaaccaggcaactaaatGCAACTTTTTAGATAATGTTTTTGGTTCACTTCTAGCTTGTTGGAAGGTGTAAACGGttcagtgaaatggttacttgcataatggggtcttttgtttagacaattaaccataatctgacccttctttggacactgtgttaacaaacctccaaacaagcttcaatgccatacaacactccttccgtggcctccaactgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU834855 lncRNA upstream 1644 64960058 ~ 64960351 (+) True cdh12a
TU834874 lncRNA upstream 14939 64946856 ~ 64947056 (+) True G735230
TU834805 lncRNA upstream 70762 64890949 ~ 64891233 (+) True G735164
TU834686 lncRNA upstream 141412 64820295 ~ 64820583 (+) True G735046
TU834412 lncRNA upstream 163412 64798364 ~ 64798583 (+) True G734805
TU834887 lncRNA downstream 79 64962299 ~ 64962601 (+) True G735243
TU834976 lncRNA downstream 95938 65058158 ~ 65130552 (+) False G735303
TU834978 lncRNA downstream 167750 65129970 ~ 65142590 (+) True G735303
TU835112 lncRNA downstream 307855 65270075 ~ 65275313 (+) True G735431
TU835190 lncRNA downstream 415549 65377769 ~ 65378118 (+) True G735498
XM_021613317.2 mRNA upstream 263469 64697289 ~ 64698526 (+) False LOC110530343
XM_036985972.1 mRNA upstream 294041 64666444 ~ 64667954 (+) False LOC110530342
XM_021613325.2 mRNA downstream 45667 65007887 ~ 65086822 (+) False cdh18a
XM_021613326.2 mRNA downstream 73781 65036001 ~ 65086822 (+) False cdh18a
XM_036985977.1 mRNA downstream 73786 65036006 ~ 65086822 (+) False cdh18a
XM_021613324.2 mRNA downstream 73788 65036008 ~ 65086822 (+) True cdh18a
XM_036985981.1 mRNA downstream 179995 65142215 ~ 65252175 (+) False dlgap1a
TU834704 other upstream 131092 64830624 ~ 64830903 (+) True G735064
TU834687 other upstream 139950 64821615 ~ 64822045 (+) True G735047
TU834343 other upstream 264126 64697313 ~ 64697869 (+) False LOC110530343
TU834286 other upstream 341988 64619040 ~ 64620007 (+) False G734690
TU835130 other downstream 362715 65324935 ~ 65348497 (+) True si:ch211-207d6.2
TU835205 other downstream 440003 65402223 ~ 65403099 (+) True G735512
TU835317 other downstream 637165 65599385 ~ 65601897 (+) True LOC110530360
TU835372 other downstream 704646 65666866 ~ 65668095 (+) True LOC110530364
TU836376 other downstream 1161988 66124208 ~ 66125338 (+) True si:ch211-106n13.3

Expression Profile