RNA id: TU834978


Basic Information

Item Value
RNA id TU834978
length 2150
lncRNA type read_through
GC content 0.42
exon number 5
gene id G735303
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 65058158 ~ 65142590 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTAGGTACAGTTATGCCATTTATTTCACTGATCAAATTCCCATCCATCAAATTTGACATGAACGAATCACACAAACCTTCCATTCCCATTTTAACATTAATTATAcgcaaggcttaaaaatcattccaggtatttccaaaaacatttaaaacatactTCAAGATTACATTTTtcaatataacatttatttaaataaaaCTAAAACACACATTACTCTAGTCCCTCAGTCAGTGATTTCTTTCAATGGATGGACTTGGATGATATGACATCTCACACAACATCTTCTTTCACTCTCATGATTTTAAGACACAATGTTAATGCACTGGGGTAGGTAGTAAGTTATGAGTCGTTAAAAAAATAATCACTTGAATTGGATCTCTTCTTTTCAGTATTGACCTGTAATCTAAAGTAAAAACACTGATGACGATTTAGAGACACAATCCAAAAATTGAAGGCATGTAATTCAAGATTCCATCTCTCCTTGTGCTTATTGAGAGTAGAAGCCCAGTAGTATTATACTATAAAAGGCCTCTATCTCTGACGGGCTGACTGACTGAGTCAGTCGTCTCTTATTGCAGTGACAGGCAGCTAAATGACGTTAATCTGGGGTGATCCTGAGGTTTATCGtcagggattacaggaggggcaggcaggccaggCGTATAAAGTGCTGTCCATCCATATCGGCACAATAATCTCATCTACACTGGCTCTTGTTATTAAACTGCAttggtttaggtttaggtttccTTTCTGTTTTCTGATTACTGATTGTATTGTCTATAGGGTTAACAATCTGCAGATTCTGATCGCAATGCATATAAAATggcacacaatatatatataatctaggGGAAAGGTTGGGGATCGGCAATGGTGGGATGGGGGATGGCGTGATGCATAGCTGTTTACTTGAAGGACCGGCGGACCTTGCGTCCCTTGAGAGGCTGAGGGGGCCGGTAGTTGTCCTGCATGCAGCAAGGTGCCTCTCCATCACCACTGAACATTAAGCTGCGGAATTTACCcatctGGTAGGGCTGACACTGATCGGTTCCTTCAGGACGATCCAGGTGACACTCTCCAGCAGAGGGGGAGTGGTCAGGGAGCCATCATATGTCCAGTAGTCCAGTGAGCAAGGCAACAGAGTTTTGGCATCAAAGTTGGAAAATGTAGTTTGCTTTCCCTAAAGAATGTACAAATTGTGATTGAATACACAATGAATAAACAAAGTCTTACTTCAACATTCCCAACCAATTCTAGTCATTCGAGGCAAGATTTCTAAATCTAAATACCATTTAAGATCAATTTGATTTCACCTTTGATTTGATGGCCCCCAGAGCATCGAGAACCTTCTGCAGTCTGGGGTTTGCAGCACCAATCTATAAGAAACAAGAATTCACACAGCCATCCAAGGGAATCAGgctactttcagaatgcacttaGAGGGAAACAAATAAACAGTGTATGAACAATCTGCACCTTCAGAAACACTCCAACCACAGCGAGTCCATCGGGTTCACTAGCGGCCTCACCAAAGCTAGGGTACTTGGTGTTCCAGTGCACCAGATGGAGCTTGAAAAAACAAAGTCAGGTTTAGCTCAGGTAGCCAATGAAAATTCTGATCTGAATCCATACGGCTTGTCCTGTTGTATAATCTAGGTCTAGGACTGCCTACCTCACAGGGGAACTTGATTCCATTGACGGTGTGCTCAGAGCCCCTGTCGTCACTGGCGCCCCAGTGGAAGTGGAACTGCTTCAGCCTGTATATGCCAGTGATGGGGCCTCCGGTCAGTGTTGAACTGTCAACATCATCCACAAAGCCAACTTGGAAGGAATGGCCATTGTTCAGAATGTCTGTGGAGTTGGATGGGTCATATTTCAGTTTGAGGGGCTTCAAGGTAGAATCATAGGAGGTTTGACCAGGAATAATATCAATAGGAGACTGCCTGGGTCCATTAGCAACAGGAAAGCCATCACACCACTTCTCAGGTCCATCAGATGGTCCATATCCCCAGCTGTGAGACATGATTATTGACTTGTGTTCCTATGCAATATAATCCCTTTCAATTCCTACTATTATCTGCCTTATTTGACAATTGTTTGTTGACCGAAAGCCATTGTTTTCAATGGGGCTACATTGTAACCACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU834887 lncRNA upstream 167369 64962299 ~ 64962601 (+) True G735243
TU834886 lncRNA upstream 167750 64961995 ~ 64962220 (+) True G735242
TU834855 lncRNA upstream 169619 64960058 ~ 64960351 (+) True cdh12a
TU834874 lncRNA upstream 182914 64946856 ~ 64947056 (+) True G735230
TU834805 lncRNA upstream 238737 64890949 ~ 64891233 (+) True G735164
TU835112 lncRNA downstream 127485 65270075 ~ 65275313 (+) True G735431
TU835190 lncRNA downstream 235179 65377769 ~ 65378118 (+) True G735498
TU835191 lncRNA downstream 247011 65389601 ~ 65390041 (+) True G735499
TU835224 lncRNA downstream 285622 65428212 ~ 65433525 (+) True G735530
TU835231 lncRNA downstream 296508 65439098 ~ 65442283 (+) True G735537
XM_021613325.2 mRNA upstream 43148 65007887 ~ 65086822 (+) False cdh18a
XM_021613326.2 mRNA upstream 43148 65036001 ~ 65086822 (+) False cdh18a
XM_036985977.1 mRNA upstream 43148 65036006 ~ 65086822 (+) False cdh18a
XM_021613324.2 mRNA upstream 43148 65036008 ~ 65086822 (+) True cdh18a
XM_021613322.2 mRNA upstream 135483 64960184 ~ 64994487 (+) False cdh12a
XM_021611267.2 mRNA downstream 119046 65261636 ~ 65262921 (+) True LOC110529128
XM_021613334.2 mRNA downstream 158405 65300995 ~ 65384014 (+) False si:ch211-207d6.2
XM_021613332.2 mRNA downstream 158405 65300995 ~ 65386540 (+) False si:ch211-207d6.2
XM_021613336.2 mRNA downstream 158405 65300995 ~ 65386540 (+) False si:ch211-207d6.2
XM_036985985.1 mRNA downstream 158405 65300995 ~ 65386540 (+) False si:ch211-207d6.2
TU834704 other upstream 299067 64830624 ~ 64830903 (+) True G735064
TU834687 other upstream 307925 64821615 ~ 64822045 (+) True G735047
TU834343 other upstream 432101 64697313 ~ 64697869 (+) False LOC110530343
TU834286 other upstream 509963 64619040 ~ 64620007 (+) False G734690
TU835130 other downstream 182345 65324935 ~ 65348497 (+) True si:ch211-207d6.2
TU835205 other downstream 259633 65402223 ~ 65403099 (+) True G735512
TU835317 other downstream 456795 65599385 ~ 65601897 (+) True LOC110530360
TU835372 other downstream 524276 65666866 ~ 65668095 (+) True LOC110530364
TU836376 other downstream 981618 66124208 ~ 66125338 (+) True si:ch211-106n13.3

Expression Profile