RNA id: TU835112


Basic Information

Item Value
RNA id TU835112
length 2336
lncRNA type antisense_over
GC content 0.40
exon number 3
gene id G735431
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 65270075 ~ 65275313 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGACTATATAGGTTGAATAAAAGATGGTGCAAGGTGTaaatcaataatgacaaatgcatatattattataattgGAAGGGATTGTATAATTTGCAGACAGTGGGTCTATTCAACTTATGCTATAAACAACCAGTTTTTCACATTCTATTCCAAAGAgttgaatcaaatggtaaagctTGAACTGAGTAGTTCTGTACTAAGTGACCATAAACTTGGGGACTTGTTAAGATGGCTGAGAGCCATGGTGTTGGGAAGGTTTCCAGCCAGCACTTACTCTGATTAACCCTGTATGCTGAAACTCTGCTGGACTCCACCATACCAGCAATTGCTATTTATCCAGCATTTAATGAAAGCAATTACTTTTAAGTCCAACAAAAATTCCCCACTTTGTTGTCTTACAACCAATGCAGAAGCTCTGAAAGAGGCAAACGTCCTGAGTAAGAAACCCTCCTGAGACTTTTAAGGGACATAATATATATGCCAGCAGTTTCTATGACAACATGGTTACCCTACAATCCATAGTGTTTTACTGAATGACCGGCTAGAATGTAAAAGTGTCTTATTAAAGTCACCAAATGATGGACTGTTGAAAATAACAAGAAGTTAATGTATAATCACATAATGTTTATAAAGAGGACTGTGAGACAGTGAAAGAGTCATATTCTAACCATCATCAGTAATAAATGACATCCAATTGAAGGAGAAATTGCTAATTGATTTTAAGCCTGTCGTTTAATGTCATGAGGTTTGGCATGAAAGGGGCAGGCAGCAGCGGACTGTGGGGGTTTGGCTTTTTTTCTGAATGCAGCCTGGGAAAGTGAGATGTGGCTGGCTGGATTAGTGGTGTACCACAGTTTCGCAGGCCCCCCAAGCAAGGTCTGAGCAAGCCTCCCCCACAAAAAAACTGTTAacttcctacaattctacacattttgccaatgAGGATGAAAGAAAATGTTTCTGTTTTAAAACTGATTTACTGCAACTGTACAAATATtgcatggggcagagagaaaaattaGGCAGACTAATTCTTatcttttttcactaattggtcttttgaccaatagatcagctctgaaaaagatctgatgtgaaaagatctgatgtgattggtcaaaagaccaattagtggggaaaagatcagaattgggctgcctatgTAAATGCAGCCTTAGGCTACTGAAATGCATCAGATATGTATGTAACTTTCTAATTTGTTTAATTGTCTGTAAAGCATAAATGTTGGTATAGGTTTGTCATTTTGAAGGGGTGCAGATTGCAGATGTGAGGGATGCTCTTTGCCTGGTATGGGACAGAAGGCAAGGAAGAGGAAGAATTCCACACAGCTCCTCTTCATCTCCTGATTCCATCTGGGATTCTGAACAATCTGTTCTTCTGCCACTCAACACACTGATGTCCATGATCTCACCGGTTCTGTCCATCTTCTGAAAACCTCCAGTACCTATGTTGGGCAGAAGTGTCCCTGCATAGCTGCTCGGCATTTTGAATCCATTGTACACAGGACTTTGGTAAGAACCAGCACTGTCCATCTACAGGAAATAAAATAGACATTCATAATACAAGATATCTTTATAATTGGAGCAGGCTACTGTTTTCAATGGGTTGCATTGATGCTTAGAGTGATAGGTTTGCAGTGTGATCAGTGTATAGCACTGTGCAGCTCACATCCATAGCATTAGAATCTTGACACCAGTGAGCTTTTAGAGAAACATCTTTGGCTTTCATCGTAACTGTCTTTCTAATGATTGACTGCTCATGGTGAACAGCCATGTGTGGAAAAGAGggggaaacaaacaaaaaagccgGACCCAAACCTATAAATATTCTTAAGCAACATCCAATGAAGGACTAAATGACGGGCTTCATGGGGCTGCACCTGTTCAACTCTGATCTGTGTGCTCTGATGTACccatttgaaaaataagactgggtgtgtgtgtgcatgtgtgggtgtgtgtgtgtatattacacAAGTGTTGGTTTCCTCTGGTGATTGAGCCATGGAATTGGCTGACAAAAATCATGCCAAAGCCCATGTAATTGTTTGAATTTTATACTCAGTGAAATGTACTGTATCCCTACTACATGCTCTTTTCAGATCAATGTACTGCCCTTATATTAATACATTTGGATAAAGGTACCTCTTTACATGCACTATCCCTAAAGATCCATCCTAAAATCTCACTATGAATGGTTTGTTCCTCACCATGTAGTTGACTGAGGCATGTTGCAGTGAAGCTGCCTGCCGCTGTAACGTCTGTCGCAAGAACATCTCATCTTTGATGGCATGGAAACTTACAATGGATGTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU834978 lncRNA upstream 127485 65129970 ~ 65142590 (+) True G735303
TU834976 lncRNA upstream 139523 65058158 ~ 65130552 (+) False G735303
TU834887 lncRNA upstream 307474 64962299 ~ 64962601 (+) True G735243
TU834886 lncRNA upstream 307855 64961995 ~ 64962220 (+) True G735242
TU834855 lncRNA upstream 309724 64960058 ~ 64960351 (+) True cdh12a
TU835190 lncRNA downstream 102456 65377769 ~ 65378118 (+) True G735498
TU835191 lncRNA downstream 114288 65389601 ~ 65390041 (+) True G735499
TU835224 lncRNA downstream 152899 65428212 ~ 65433525 (+) True G735530
TU835231 lncRNA downstream 163785 65439098 ~ 65442283 (+) True G735537
TU835233 lncRNA downstream 172071 65447384 ~ 65447630 (+) True G735538
XM_021611267.2 mRNA upstream 7154 65261636 ~ 65262921 (+) True LOC110529128
XM_036985978.1 mRNA upstream 16102 65142215 ~ 65253973 (+) False dlgap1a
XM_036985979.1 mRNA upstream 16102 65142215 ~ 65253973 (+) False dlgap1a
XM_036985980.1 mRNA upstream 16102 65142215 ~ 65253973 (+) False dlgap1a
XM_036985982.1 mRNA upstream 16102 65142215 ~ 65253973 (+) True dlgap1a
XM_021613334.2 mRNA downstream 25682 65300995 ~ 65384014 (+) False si:ch211-207d6.2
XM_021613332.2 mRNA downstream 25682 65300995 ~ 65386540 (+) False si:ch211-207d6.2
XM_021613336.2 mRNA downstream 25682 65300995 ~ 65386540 (+) False si:ch211-207d6.2
XM_036985985.1 mRNA downstream 25682 65300995 ~ 65386540 (+) False si:ch211-207d6.2
XM_021613333.2 mRNA downstream 43744 65319057 ~ 65386540 (+) False si:ch211-207d6.2
TU834704 other upstream 439172 64830624 ~ 64830903 (+) True G735064
TU834687 other upstream 448030 64821615 ~ 64822045 (+) True G735047
TU834343 other upstream 572206 64697313 ~ 64697869 (+) False LOC110530343
TU834286 other upstream 650068 64619040 ~ 64620007 (+) False G734690
TU835130 other downstream 49622 65324935 ~ 65348497 (+) True si:ch211-207d6.2
TU835205 other downstream 126910 65402223 ~ 65403099 (+) True G735512
TU835317 other downstream 324072 65599385 ~ 65601897 (+) True LOC110530360
TU835372 other downstream 391553 65666866 ~ 65668095 (+) True LOC110530364
TU836376 other downstream 848895 66124208 ~ 66125338 (+) True si:ch211-106n13.3

Expression Profile