RNA id: TU835224



Basic Information


Item Value
RNA id TU835224
length 533
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G735530
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 65428212 ~ 65433525 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AATTTTAGGGCATTGGATCCCTCTGGGCCGTCAAACTTGAAATTGTTAAAATCAGGAAAATCCCCAGCATCAGAACTTCTTGGAGCAAATCTTTTGTATTGTTTTATCTTGGTGTCTGGGTCCACATGAAGAGCATAGTCACTCATGCTACCACAAACTCCATCCAGAAGCTCACTCAAGTTGGCCTCAGACCTAGCAAGAGGGACCTTTTATCAGTCAGGCTCCCATCAGGGTTGAGTCTGAAGCCTCCCACATGGATTGTCTTCTTCGGATCAATCTGACTGATTGAATAATTGAGCTCATCAACAATAGCCCTGCATGCTAAAAAAAACAGACATAGATTAGAACAATCCACAGCACTCATTTACTATAAAACAAGTATTTATAGATCCATATTATGCCCACAGCTAGCGAAAAGCAAAAGTAAAACTACAATAAAATTATTTCTCATGAAATAAGCTTGATAGAAATGTTTTGACAATACAGGGTGCACACTAGAAACAAAAGTAAATAAGTCATTGTGTATGCAGAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU835191 lncRNA upstream 38171 65389601 ~ 65390041 (+) True G735499
TU835190 lncRNA upstream 50094 65377769 ~ 65378118 (+) True G735498
TU835112 lncRNA upstream 152899 65270075 ~ 65275313 (+) True G735431
TU834978 lncRNA upstream 285622 65129970 ~ 65142590 (+) True G735303
TU834976 lncRNA upstream 297660 65058158 ~ 65130552 (+) False G735303
TU835231 lncRNA downstream 5573 65439098 ~ 65442283 (+) True G735537
TU835233 lncRNA downstream 13859 65447384 ~ 65447630 (+) True G735538
TU835267 lncRNA downstream 51495 65485020 ~ 65485307 (+) True G735569
TU835268 lncRNA downstream 53256 65486781 ~ 65487147 (+) True G735570
TU835271 lncRNA downstream 58327 65491852 ~ 65492149 (+) True G735573
XM_021613339.2 mRNA upstream 6233 65416276 ~ 65421979 (+) True LOC110530354
XM_021613332.2 mRNA upstream 41672 65300995 ~ 65386540 (+) False si:ch211-207d6.2
XM_021613344.2 mRNA downstream 77938 65511463 ~ 65520143 (+) True LOC110530357
XM_021613347.2 mRNA downstream 128168 65561693 ~ 65587630 (+) True LOC110530359
XM_021613348.2 mRNA downstream 165806 65599331 ~ 65602141 (+) False LOC110530360
XM_021613350.2 mRNA downstream 220914 65654439 ~ 65657897 (+) True pi15b
XM_036985992.1 mRNA downstream 225764 65659289 ~ 65670369 (+) False LOC110530364
TU835205 other upstream 25113 65402223 ~ 65403099 (+) True G735512
TU835130 other upstream 79715 65324935 ~ 65348497 (+) True si:ch211-207d6.2
TU834704 other upstream 597309 64830624 ~ 64830903 (+) True G735064
TU834687 other upstream 606167 64821615 ~ 64822045 (+) True G735047
TU834343 other upstream 730343 64697313 ~ 64697869 (+) False LOC110530343
TU835317 other downstream 165860 65599385 ~ 65601897 (+) True LOC110530360
TU835372 other downstream 233341 65666866 ~ 65668095 (+) True LOC110530364
TU836376 other downstream 690683 66124208 ~ 66125338 (+) True si:ch211-106n13.3
TU837120 other downstream 1221137 66654662 ~ 66655753 (+) True G737194
TU837146 other downstream 1266161 66699686 ~ 66704085 (+) True kncn

Expression Profile