RNA id: TU836512



Basic Information


Item Value
RNA id TU836512
length 317
lncRNA type intronic
GC content 0.44
exon number 1
gene id G736665
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 66280730 ~ 66281046 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CAGCACTGCTCGACATGCCCCGCGCTGCAACACTTCAGCTTCAACCTTCCTCCCTCACACTCTTCCTTTCACACTTCCCCTCACACCCCCTTCTTCCATCCCTCTGTATAGCATTAGCCTGACACATTGTTGTACACGTAACCATTTTCACATCCTCATCTACTCTTTTACACATCCTTGTCCATTCCTTATATCATTGTGGGAACGACACTGGACACGGTCCTCTTAATTAtgatacctacagttgaagtcggaagtttacatgcaccttatccaaatacatttaaactcagtttttcacaattcctgacatttaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU836511 lncRNA upstream 703 66279758 ~ 66280027 (+) True G736664
TU836510 lncRNA upstream 2656 66277851 ~ 66278074 (+) True G736663
TU836509 lncRNA upstream 3646 66276884 ~ 66277084 (+) True G736662
TU836505 lncRNA upstream 6022 66269839 ~ 66274708 (+) True G736659
TU836501 lncRNA upstream 8731 66269839 ~ 66271999 (+) False G736659
TU836514 lncRNA downstream 2125 66283171 ~ 66283454 (+) True G736667
TU836515 lncRNA downstream 3162 66284208 ~ 66284430 (+) True G736668
TU836516 lncRNA downstream 4709 66285755 ~ 66286278 (+) True G736669
TU836519 lncRNA downstream 10921 66291967 ~ 66293276 (+) True G736671
TU836528 lncRNA downstream 22501 66303547 ~ 66303946 (+) True G736678
XM_021613386.2 mRNA upstream 20111 66223990 ~ 66260619 (+) True LOC110530387
XM_021613387.2 mRNA upstream 20923 66223982 ~ 66259807 (+) False LOC110530387
XM_021613381.2 mRNA upstream 61886 66210003 ~ 66218844 (+) False blvra
XM_021613382.2 mRNA upstream 61886 66210009 ~ 66218844 (+) True blvra
XR_002474518.2 mRNA upstream 139274 66139734 ~ 66141456 (+) True LOC110530386
XM_021613401.2 mRNA downstream 156335 66437381 ~ 66509379 (+) False LOC110530392
XM_021613402.2 mRNA downstream 156650 66437696 ~ 66509379 (+) False LOC110530392
XM_021613403.2 mRNA downstream 229379 66510425 ~ 66596240 (+) False LOC110530393
XM_036986010.1 mRNA downstream 229379 66510425 ~ 66596240 (+) False LOC110530393
XM_036986011.1 mRNA downstream 229379 66510425 ~ 66596240 (+) False LOC110530393
TU836376 other upstream 155392 66124208 ~ 66125338 (+) True si:ch211-106n13.3
TU835372 other upstream 612635 65666866 ~ 65668095 (+) True LOC110530364
TU835317 other upstream 678833 65599385 ~ 65601897 (+) True LOC110530360
TU835205 other upstream 877631 65402223 ~ 65403099 (+) True G735512
TU835130 other upstream 932233 65324935 ~ 65348497 (+) True si:ch211-207d6.2
TU837120 other downstream 373616 66654662 ~ 66655753 (+) True G737194
TU837146 other downstream 418640 66699686 ~ 66704085 (+) True kncn
TU837166 other downstream 517527 66798573 ~ 66802080 (+) False G737234
TU837167 other downstream 517527 66798573 ~ 66801060 (+) True G737234
TU837788 other downstream 889421 67170467 ~ 67215629 (+) True G737783

Expression Profile