RNA id: TU836564



Basic Information


Item Value
RNA id TU836564
length 1280
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G736701
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 66337758 ~ 66340249 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aaaaaacatttattcacTGAGCACCAGTCAATGAGTACATAGTTTCTCTGAATCACTGTAACAGCTATTCAAATATCTAGTTCTCAATCATAGATTTGTTTAAAGTACATCTACAGTAAGTCAATTAGTGGAATACCGTACAAAAACAACTATTTCATGGTGATAGCGCAGGCAGAttgaacattatatatatatatatatattttgttcaaTTTAATTTTCAAAGTGAACCTATGTGCTGCCACATTTTAAGATTATGTGCTGTTACAGTATAAATAAAATACGAAACTTAGAATTCAACTTAAATACTAAGACAAAGTCGCTCGCAACAGAAAAACCCTTAATTTTCACAGACAAAAAGCCTTCATGGATATGGAAACCCCAAACTATTCAAATAAACTCAGTGCATCTAAATGACTTCAAGGCTTGAGGGAGCAACACATGGTTCCCTTGTCTGAATAGATCCTggcatttcattattcttttttaTCACGGAAAACAGAAAAATCAGTCGTCCTAATTTCATCATATTGTTTGTTTTGGGGTCTGATACAGTAAACCACAAAAGGTTAGAATGGTTGCTGTCTCTATGCAAACTACTCTACTAGGCACTTAAGAATAAGACTCGAATGAGCAAACCAACAAAAATAAACCGTGTTAAAGGCTACTCCTGCAGAAACAATGTGGGTTAGTCGGTTGGTTGCTGATCACCAGTTCTTTGGCATTCCTTCAGTCAAATTGAAACACAATGAATTGGAGTGATGCAGTGCTTTTGACAGGAAGTAATTTACATTATATTTACACCTTTCTTAAAGAAACAGTAAACATACATTAGTGACCAGTGCAATGTAGTGATGCTGTGTTGATGAGAGTTTAATATTGAGAGGTGAATGAACAGAGGGAGTTTCATCTGTGGTCAGTATGAAGCTGCTCTGTCTTTTTGTGGTAGAGATGTGAGTGCTGTGGTGTGTGATAGCGCCTCATGTTGTCCAGCACATAGCTGCTCTATGTTAATAGgagacgtatgtgtgtgtgtttgtgagagagtaTACTAGATGTATGTGTGTTGATGTTAATTAGACCTCCTGTGGTCAATGTAGCTGTTCTCGATACACAGCACTATGAAATGGTTGGAGCAGCTGCGGGTGTGTTGGCCCAGAAGTCTGCCTGTCTGGAGGAGCGAAGCCTGGCCCGTCACCGCCATGTCACCCGCCCGCCACGCCTCACAGTAGTTAGTGGTCATACGGATGCCCACCGTACTGGAGCCATGCCACACCAGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU836530 lncRNA upstream 32675 66305950 ~ 66306260 (+) True G736680
TU836529 lncRNA upstream 33675 66305026 ~ 66305260 (+) True G736679
TU836528 lncRNA upstream 34989 66303547 ~ 66303946 (+) True G736678
TU836519 lncRNA upstream 45659 66291967 ~ 66293276 (+) True G736671
TU836516 lncRNA upstream 52657 66285755 ~ 66286278 (+) True G736669
TU836568 lncRNA downstream 1873 66342122 ~ 66343132 (+) True G736704
TU836570 lncRNA downstream 3027 66343276 ~ 66345105 (+) True G736705
TU836923 lncRNA downstream 64072 66404321 ~ 66404821 (+) True G737025
TU836928 lncRNA downstream 69187 66409436 ~ 66411072 (+) True G737030
TU836975 lncRNA downstream 167846 66508095 ~ 66509201 (+) True LOC110530392
XM_021613386.2 mRNA upstream 78316 66223990 ~ 66260619 (+) True LOC110530387
XM_021613387.2 mRNA upstream 79128 66223982 ~ 66259807 (+) False LOC110530387
XM_021613381.2 mRNA upstream 120091 66210003 ~ 66218844 (+) False blvra
XM_021613382.2 mRNA upstream 120091 66210009 ~ 66218844 (+) True blvra
XR_002474518.2 mRNA upstream 197479 66139734 ~ 66141456 (+) True LOC110530386
XM_021613401.2 mRNA downstream 97132 66437381 ~ 66509379 (+) False LOC110530392
XM_021613402.2 mRNA downstream 97447 66437696 ~ 66509379 (+) False LOC110530392
XM_021613403.2 mRNA downstream 170176 66510425 ~ 66596240 (+) False LOC110530393
XM_036986010.1 mRNA downstream 170176 66510425 ~ 66596240 (+) False LOC110530393
XM_036986011.1 mRNA downstream 170176 66510425 ~ 66596240 (+) False LOC110530393
TU836376 other upstream 213597 66124208 ~ 66125338 (+) True si:ch211-106n13.3
TU835372 other upstream 670840 65666866 ~ 65668095 (+) True LOC110530364
TU835317 other upstream 737038 65599385 ~ 65601897 (+) True LOC110530360
TU835205 other upstream 935836 65402223 ~ 65403099 (+) True G735512
TU835130 other upstream 990438 65324935 ~ 65348497 (+) True si:ch211-207d6.2
TU837120 other downstream 314413 66654662 ~ 66655753 (+) True G737194
TU837146 other downstream 359437 66699686 ~ 66704085 (+) True kncn
TU837166 other downstream 458324 66798573 ~ 66802080 (+) False G737234
TU837167 other downstream 458324 66798573 ~ 66801060 (+) True G737234
TU837788 other downstream 830218 67170467 ~ 67215629 (+) True G737783

Expression Profile