RNA id: TU836570


Basic Information

Item Value
RNA id TU836570
length 1772
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G736705
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 66343276 ~ 66345105 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTATGCCTTGCGCACAATGGAATATCTGATGACTTACCTTGTGACGACCCTTTGCTGCCATTAACCTACAAGTCAAAATGGTATGGTTATTGTGGAAGGATTTTACGGTTAAAATATGAAATTATACCCACAACCAGATCCACCACCAAATAATCAACAATAAAACAGCTTTACATCCTATACACAACAGGTATAGTTGTTTTGTTTCAGTCAAGATGGCCATTCAAAAATGTCTGAAAATCAAAAGACATGTTATAGGAGAGAGATTTGTAATTACATCCAAACATCCATGCCAGCCTAATTGGCATCCAAACATCCATGCCAGCCTTGCACACAAAAGTTAAACATAGAATGAGGACAAGGATGGCAAGAGGTAGTAAGGAACTCGGTTTAATGTTCTTATTTTGGTTGGTCACCTTGAATCACAGGAGTTAGCCTTAACATTTTAGCACTGTAAagctaaaaaacaacaacagataaAACCACATGCAACAGCAACATGCCGGGGGTAGAAACCTTCCACCCCGCCAAACCAGGGCTCAGAGTTAAGGAACAAGAACACTCGAGGGGAATTTTTACACCGTCAGCATAAAGCAGGCAGAAAAttgatttttttcttcttcatagattctaaaatgtatgtattGAAGTCAATATGGCTAGTTAGTGTGGTTgagatatataaatatatgtaaaGTGACTATGATGTCACATGACCTTCTGACCTGCGGAGAAGCAGGAGCCAGCTTTATGCTATCGTGAGGACCACCACAAACCCAGGAAACACGGAGGGAGACAGCACGGCTGCAgacaggaggggagggaagggaggggctGCCTGTTAGGGGTAAGAGCCCACGGACTTACATGCGCCGCCACACCCAAAGAGCCTTAAAGGGGCTCAAACACAAACTTACTGGTGTTTTGCAGAACGGTCTGGGACGGACCGGAAAAACTGTCTTTAAGATTCAGAGGAAAATTATGACATCAGCATTGATATTGACGACATCTGGATATCCAATGAAAGCGAGTTCTTCATGTGTTGACATTAGATCATTACTGGAGACAAACTACCATTTTGTTGTTCTGTTTTGTTTGTCTCCGGTGTGTCTTGTTGCTTCTATATGAACATTGCTACTAAATCAAAGGACCAATCTCTTCCATAGCGCATACTAATTATAGTAGAGAAACAGCAATGACATCAATGTGTACTTATACAGCAATGACATCAATGTGTACTTATACAGCAATGACATCAATGTGTACTTATACAGGCATACTGTACTTACTCCATTGAGCCCTGTTACTGGTCCTGGGGGTCCGGGAGGGCCAGGAGGACCAGGAAGTCCCTacaaacacaatcacacagaTCAATCAATCACAGTCAATGACACCTCACTTTTCTGTCACTTAGTTGATTGTACTGTACTCGCATAAAATCATGTTTTAAGATGGCGATTCTTACTGGTTGACCAATGGCATCTCCCTGGTCTCCCTTCTTCCCTGCCATTCCAGGTCGCCCCTGCGGAGGTAAGAAGGCCAACACTTAAACAGGGAAAGTTACATTGACTCATCTTTTACTCAACCAAATTAAAACAGCAGAGGGTTGACAAAAAGCACTGACCGGTCGACCAGGGAACCCGTATTCTCCCTTTTGTCCAGTTGGTCCAATTGGTCCCTGAAAAATAACATGCTTTTCTATAATTTCACGTTCACCCACTACTAGACAGTAGATGTTTACAGTTGTTACAGATACCAATATGTATAATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU836568 lncRNA upstream 144 66342122 ~ 66343132 (+) True G736704
TU836561 lncRNA upstream 3027 66337758 ~ 66340249 (+) False G736701
TU836553 lncRNA upstream 3027 66338935 ~ 66340249 (+) False G736701
TU836554 lncRNA upstream 3027 66338935 ~ 66340249 (+) False G736701
TU836555 lncRNA upstream 3027 66338935 ~ 66340249 (+) False G736701
TU836923 lncRNA downstream 59216 66404321 ~ 66404821 (+) True G737025
TU836928 lncRNA downstream 64331 66409436 ~ 66411072 (+) True G737030
TU836975 lncRNA downstream 162990 66508095 ~ 66509201 (+) True LOC110530392
TU837083 lncRNA downstream 271980 66617085 ~ 66617353 (+) True G737161
TU837084 lncRNA downstream 272261 66617366 ~ 66617618 (+) True G737162
XM_021613386.2 mRNA upstream 82657 66223990 ~ 66260619 (+) True LOC110530387
XM_021613387.2 mRNA upstream 83469 66223982 ~ 66259807 (+) False LOC110530387
XM_021613381.2 mRNA upstream 124432 66210003 ~ 66218844 (+) False blvra
XM_021613382.2 mRNA upstream 124432 66210009 ~ 66218844 (+) True blvra
XR_002474518.2 mRNA upstream 201820 66139734 ~ 66141456 (+) True LOC110530386
XM_021613401.2 mRNA downstream 92276 66437381 ~ 66509379 (+) False LOC110530392
XM_021613402.2 mRNA downstream 92591 66437696 ~ 66509379 (+) False LOC110530392
XM_021613403.2 mRNA downstream 165320 66510425 ~ 66596240 (+) False LOC110530393
XM_036986010.1 mRNA downstream 165320 66510425 ~ 66596240 (+) False LOC110530393
XM_036986011.1 mRNA downstream 165320 66510425 ~ 66596240 (+) False LOC110530393
TU836376 other upstream 217938 66124208 ~ 66125338 (+) True si:ch211-106n13.3
TU835372 other upstream 675181 65666866 ~ 65668095 (+) True LOC110530364
TU835317 other upstream 741379 65599385 ~ 65601897 (+) True LOC110530360
TU835205 other upstream 940177 65402223 ~ 65403099 (+) True G735512
TU835130 other upstream 994779 65324935 ~ 65348497 (+) True si:ch211-207d6.2
TU837120 other downstream 309557 66654662 ~ 66655753 (+) True G737194
TU837146 other downstream 354581 66699686 ~ 66704085 (+) True kncn
TU837166 other downstream 453468 66798573 ~ 66802080 (+) False G737234
TU837167 other downstream 453468 66798573 ~ 66801060 (+) True G737234
TU837788 other downstream 825362 67170467 ~ 67215629 (+) True G737783

Expression Profile