RNA id: TU837084



Basic Information


Item Value
RNA id TU837084
length 253
lncRNA type intronic
GC content 0.32
exon number 1
gene id G737162
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 66617366 ~ 66617618 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ccctacattactcatctcatatgtatatgtatatactgtactctatatcatctattgcatcttgccatctttatgtaatacatgtatcactagccactttaaactatgccactttatgtttatataccctacattactcatctcatatgtatatactgtactctataccatctactgcatcttgcctatgccgttctgtaccatcactcattcatatatctttatgtatatattctttatccctttacacttg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU837083 lncRNA upstream 13 66617085 ~ 66617353 (+) True G737161
TU836975 lncRNA upstream 108165 66508095 ~ 66509201 (+) True LOC110530392
TU836928 lncRNA upstream 206294 66409436 ~ 66411072 (+) True G737030
TU836923 lncRNA upstream 212545 66404321 ~ 66404821 (+) True G737025
TU836570 lncRNA upstream 272261 66343276 ~ 66345105 (+) True G736705
TU837112 lncRNA downstream 28721 66646339 ~ 66646563 (+) True G737189
TU837115 lncRNA downstream 31369 66648987 ~ 66649443 (+) True LOC118965632
TU837127 lncRNA downstream 42377 66659995 ~ 66660226 (+) True G737200
TU837129 lncRNA downstream 43845 66661463 ~ 66661676 (+) True G737202
TU837145 lncRNA downstream 86642 66704260 ~ 66706474 (+) True G737216
XM_036986010.1 mRNA upstream 21126 66510425 ~ 66596240 (+) False LOC110530393
LOC118965632 mRNA downstream 31016 66648634 ~ 66649552 (+) False LOC118965632
LOC110530967 mRNA downstream 53485 66671103 ~ 66672607 (+) True LOC110530967
XM_021613413.2 mRNA downstream 81593 66699211 ~ 66704200 (+) False kncn
XM_021613414.2 mRNA downstream 94469 66712087 ~ 66714672 (+) False LOC110530397
XR_002474521.2 mRNA downstream 94469 66712087 ~ 66721454 (+) True LOC110530397
TU836376 other upstream 492028 66124208 ~ 66125338 (+) True si:ch211-106n13.3
TU835372 other upstream 949271 65666866 ~ 65668095 (+) True LOC110530364
TU835317 other upstream 1015469 65599385 ~ 65601897 (+) True LOC110530360
TU835205 other upstream 1214267 65402223 ~ 65403099 (+) True G735512
TU835130 other upstream 1268869 65324935 ~ 65348497 (+) True si:ch211-207d6.2
TU837120 other downstream 37044 66654662 ~ 66655753 (+) True G737194
TU837146 other downstream 82068 66699686 ~ 66704085 (+) True kncn
TU837166 other downstream 180955 66798573 ~ 66802080 (+) False G737234
TU837167 other downstream 180955 66798573 ~ 66801060 (+) True G737234
TU837788 other downstream 552849 67170467 ~ 67215629 (+) True G737783

Expression Profile