RNA id: TU837169



Basic Information


Item Value
RNA id TU837169
length 848
lncRNA type inter_gene
GC content 0.50
exon number 3
gene id G737235
representative False

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 66787941 ~ 66794377 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AAGGGAGGGGACAGTGATGAATCAGCGGAAACACAGGCTGCCGCTGCAAGCTCAGCAAAGAGATCAGTAGGATAATTCGGTATTTCCCCAAGTCCTAGAAGGAGCTTAAATAGATATACAAACATTGAAGAGGATGACATGTTATTAAGTTGTTATCAGTGGAGCAGtcaggtgacctagtggttagagctttgggatTGCTCATTTGAATCCCCATGCTGAAaagaggacctgagccctaggcccatgcctcaggactacctggcatgatgattcCTTTCTGTCCccgtccacctggccgtgctgctgctccagttttaactgttctgcctgcggctatggaaccctgacctgttcaccggacgtgctacctgtcccagacctattgttttcaactctctagagacagtagGAGCGAtggagatactctcaatgatcggctatgaaaagccaactgacacttactcctgaggacctgagccctaggaccatgccccaggactacctgacatgatgactccttgctgtccccagtccacctggctgtgctgctgctccagtttcaactgttctgccttattattattcgaccatgctgatcatttatgaacatttgaacatcttggccatgttctgttataatctccacccggcacagccagaagaggactggccatcccacatatgctctctctaatgctctctttctttctctctctcggaggacctgagccctaggaccatgccccaggaatacctgacatgatgactccttgctgtccccagtccacctgactgtgctgctgctccagtttcaactattctgccttattattattcgaccatgc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU837151 lncRNA upstream 61053 66725634 ~ 66726888 (+) True G737222
TU837153 lncRNA upstream 74626 66713091 ~ 66713315 (+) True G737224
TU837145 lncRNA upstream 81467 66704260 ~ 66706474 (+) True G737216
TU837129 lncRNA upstream 126265 66661463 ~ 66661676 (+) True G737202
TU837127 lncRNA upstream 127715 66659995 ~ 66660226 (+) True G737200
TU837242 lncRNA downstream 33971 66828348 ~ 66828626 (+) True G737300
TU837653 lncRNA downstream 147225 66941602 ~ 66941897 (+) True G737663
TU837723 lncRNA downstream 275670 67070047 ~ 67070309 (+) True G737720
TU838055 lncRNA downstream 439517 67233894 ~ 67234129 (+) True G738026
TU838066 lncRNA downstream 444852 67239229 ~ 67239429 (+) True G738037
XR_002474521.2 mRNA upstream 66487 66712087 ~ 66721454 (+) True LOC110530397
XM_021613414.2 mRNA upstream 73269 66712087 ~ 66714672 (+) False LOC110530397
XM_021613413.2 mRNA upstream 83741 66699211 ~ 66704200 (+) False kncn
LOC110530967 mRNA upstream 115334 66671103 ~ 66672607 (+) True LOC110530967
LOC118965632 mRNA upstream 138389 66648634 ~ 66649552 (+) False LOC118965632
XR_002474332.2 mRNA downstream 35554 66829931 ~ 66830478 (+) True LOC110529133
XM_036986016.1 mRNA downstream 73138 66867515 ~ 66935353 (+) False LOC110530398
XM_036986017.1 mRNA downstream 73140 66867517 ~ 66935353 (+) False LOC110530398
XM_036986018.1 mRNA downstream 73144 66867521 ~ 66933076 (+) True LOC110530398
XM_021613418.2 mRNA downstream 154245 66948622 ~ 66973138 (+) False LOC110530399
TU837146 other upstream 83856 66699686 ~ 66704085 (+) True kncn
TU837120 other upstream 132188 66654662 ~ 66655753 (+) True G737194
TU836376 other upstream 662603 66124208 ~ 66125338 (+) True si:ch211-106n13.3
TU835372 other upstream 1119846 65666866 ~ 65668095 (+) True LOC110530364
TU835317 other upstream 1186044 65599385 ~ 65601897 (+) True LOC110530360
TU837166 other downstream 4196 66798573 ~ 66802080 (+) False G737234
TU837167 other downstream 4196 66798573 ~ 66801060 (+) True G737234
TU837788 other downstream 376090 67170467 ~ 67215629 (+) True G737783
TU838049 other downstream 436805 67231182 ~ 67231913 (+) True G738020
TU838300 other downstream 751752 67546129 ~ 67547609 (+) True G738244

Expression Profile