RNA id: TU837166


Basic Information

Item Value
RNA id TU837166
length 2416
RNA type TUCP
GC content 0.46
exon number 5
gene id G737234
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 66798573 ~ 66802080 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGGAACGCTACAATTGGCAAGACTGAGCCAAATGTAAAAGACAGTGTTTGGAGCCAGACATCTAAAGAATGTACCAGACAACATGATCCAGGAATGTGTCAAATCTGGAGACAGAAACGTTGCCATTTAAAGACACTGCCTAGTTAGTTAACATTGAAACTGTACATAGTTTAAAAGGCAGGTCAACATACAAAGTACACAAACTAGCCATAGGTTTTATTAAGAAAGTGACACATGCCACCCAGCCCTAGTCTTCAGTGTCAATATGTTCTTTAGAGCATTTCAGTTCAACAGACTGCAGGGAAAGAGACCAAATGAGGACTTAAACAGTTACATTACAAATACTCCCCACTAGAAAACAACCAACACGAGAGGGGAAAGACAATACCCTGTCAGACACTCTTTCCCTCCCCCCCATATGTTAACACCAGATTTAATTCCATGTTAAGTTGACCAGCCAACTTTAAGCTACATAAAAATGCAAGGTTAGAATCATTTCagtggaaaataaaaaaaatgacaaataCAGTACTAGTTTGACTTTTcagccattaaaaaaaaaaaatgagggTGAGGGGGAAGGGGACTAAGTCCAGAGAGCAGTGGATCTCGTTGGGTCTAATAGTCCACAGGTTCATCTCCCTCCTCGCTGAGCAAACAGGTGCGGATCAGAGCCTCCGTCACGGCATACGGGTCGCAGTTGGCCGACGGGCGGCGGTCCTCAAAGTAGCCCTTCTTCTCCTGGCCCACGGTGCGAGGGATGCGGATACTGGCGCCACGGTTGGCTACGCCAGCAGAGAACTCGTGGATATTGGAGGTTTCATGGTGGCCGGTGAGGCGACGGGCGTTGTCAAGCCCCCCTTTAGGGTCGTAGGCACGGATGTGGTAGCTATGCCTCCTCCCCAGCCTCTCAATGGACTCCTCAATGGCCCTGAGCAGGAAAGATAATTAAATTAAAACACAGAAAAGTAGACAGGTGGGTCAGCACCATTTGCATTACATAGAGAATATTAAAGTAAGTCTGGCTTAATTCAACATCCAAAAGACATACAGATTGGGTGCTAGTGAACAAACGATGCATGCCAATTTCTCATTAAACCTTGCATGAATGCATCTTGATATGAGCCAGTACTCACTTTAACCCGCCTTCTTCCCGCATCTCTTTGGTGCTGAAATTGGTGTGGCAGCCAGCACCGTTCCAGTTCCCAGGGATAGGCTTGGGGTCAAATGAGGCCACCACGCCAAAGTCCTCACACACCCGGTGGAGGATGAAGCGAGCCACCCAGAGGTGATCACCCATGGTGATGCCTTCACAAGGACCAACCTGGAACTCCCACTAAAAATGGACAAAACAAGTGTTTGAGTACGTCAGTCTTTTCTATTGGCGGATCCTATGCAATCACAGAAACGCCAAATTTTAAAACAGTATTTGACCTTACCTGTGCAGGCATTACTTCAGCATTGGTGCCACAGATCATGACCCCAGCATACAGACAGGCTCTATAGTGGGCTTCCACAATATCTCTACCATAGGCCTTGTCAGATCCCACTCCACAATAATAGGGATTGTGGGCCAGGGAAGCCGTTGTTGGGCCAGCCAAATGGGTGTCCATCAGTGCCTAGGATTGTGTACTCTTGCTCCATGCCAAACCAAGGGATCTGGTTCTCAACCAGGTCCATGACTTTCTTACAAGTCAAACGAAGGTTGGTTTGCAGGCTTGTGGTTGTACTTCAGCACTTCACACAATACCAATTTGTTGGGGTCTTTGCGGAAGGGATCTCTGAACATTGCAGAAGGAATCAAATACATATCACTGTTTGAGCCCTCAGACTGGTAGGTGCTGGAGCCATCAAAGTTCCATTCCGGCAGTTCTTCGATGCTCTTGGGCTCCGAATCCAGCGTTCTGGTTTTGCAGCGGAGTCCCTCTCCGGTTCCATCGATCCAGACATACATGACTTGGACTTTGTCTCCCTGAGGGAGTTCCATGTACTGCTGTTTAACAGCCTTACTTAGTTCGGCGCTGGCGGACATAGCCATCTTGTTTGTTATAAAACACCTGGAAATACGAGAAATTTTAAATAAAATTTAAAGGACTGGCAAGTCCAATATAATGTCAAAAAATATCCCGATAGTTGTTCTCTCATTCTAGCTTCGACTTCTTGTTTCAGTTCAATTTATAACAAGAGAGTTGGAGCTCGGAGTCTTTGATTGGTCAGAGAAAAACACGATTTGTTTATTCCAAAGTGAGTGACAGCACACCCGGCTCGATCATTGGACAGGGTTCGAGTCGCAACGCCCTCTAGTATGGTTAAAAAGCATTGCGTGTCATTTTGTGTGActgatacaatgtatccagtaCGGTACAGTTGATACAATAACCAGTGTAGGCTATTTAGTACCTACACCATTACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU837169 lncRNA upstream 4196 66787941 ~ 66794377 (+) False G737235
TU837170 lncRNA upstream 8878 66787941 ~ 66789695 (+) True G737235
TU837151 lncRNA upstream 71685 66725634 ~ 66726888 (+) True G737222
TU837153 lncRNA upstream 85258 66713091 ~ 66713315 (+) True G737224
TU837145 lncRNA upstream 92099 66704260 ~ 66706474 (+) True G737216
TU837242 lncRNA downstream 26268 66828348 ~ 66828626 (+) True G737300
TU837653 lncRNA downstream 139522 66941602 ~ 66941897 (+) True G737663
TU837723 lncRNA downstream 267967 67070047 ~ 67070309 (+) True G737720
TU838055 lncRNA downstream 431814 67233894 ~ 67234129 (+) True G738026
TU838066 lncRNA downstream 437149 67239229 ~ 67239429 (+) True G738037
XR_002474521.2 mRNA upstream 77119 66712087 ~ 66721454 (+) True LOC110530397
XM_021613414.2 mRNA upstream 83901 66712087 ~ 66714672 (+) False LOC110530397
XM_021613413.2 mRNA upstream 94373 66699211 ~ 66704200 (+) False kncn
LOC110530967 mRNA upstream 125966 66671103 ~ 66672607 (+) True LOC110530967
LOC118965632 mRNA upstream 149021 66648634 ~ 66649552 (+) False LOC118965632
XR_002474332.2 mRNA downstream 27851 66829931 ~ 66830478 (+) True LOC110529133
XM_036986016.1 mRNA downstream 65435 66867515 ~ 66935353 (+) False LOC110530398
XM_036986017.1 mRNA downstream 65437 66867517 ~ 66935353 (+) False LOC110530398
XM_036986018.1 mRNA downstream 65441 66867521 ~ 66933076 (+) True LOC110530398
XM_021613418.2 mRNA downstream 146542 66948622 ~ 66973138 (+) False LOC110530399
TU837146 other upstream 94488 66699686 ~ 66704085 (+) True kncn
TU837120 other upstream 142820 66654662 ~ 66655753 (+) True G737194
TU836376 other upstream 673235 66124208 ~ 66125338 (+) True si:ch211-106n13.3
TU835372 other upstream 1130478 65666866 ~ 65668095 (+) True LOC110530364
TU835317 other upstream 1196676 65599385 ~ 65601897 (+) True LOC110530360
TU837788 other downstream 368387 67170467 ~ 67215629 (+) True G737783
TU838049 other downstream 429102 67231182 ~ 67231913 (+) True G738020
TU838300 other downstream 744049 67546129 ~ 67547609 (+) True G738244
TU838937 other downstream 1104297 67906377 ~ 67922622 (+) True LOC110530413
TU839857 other downstream 2056303 68858383 ~ 68858753 (+) True G739648

Expression Profile