RNA id: TU838049


Basic Information

Item Value
RNA id TU838049
length 732
RNA type TUCP
GC content 0.43
exon number 1
gene id G738020
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 67231182 ~ 67231913 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaattactaatgatgataaatacaatccacctgtgtgtaatcaagtctccgtataaatgcacctgcactgtgatagtctcagaggtccgttaaaagcgcagagagcattatgaagaacaaggaacacaccaggcaggtccgagatactgttgtgaagaagtttaaagccggatttggatacaaaaatatttcccaagctttaaacatcccaaggagcactgtgcaagcgataatattgacatggaaggagtatcagaccactgcaaatctaccaagacctggccgtccctctaaactttcagctcatacaaggagaagactgatcagagatgcagccaagaggcccataatcactctggatgaacagcagagatctacagctgaggtgggagactctgtccataggacaacaatcagtcgtatattgcacaaatctggcctttatggaagagtggcaagaagaaagccatttcttaaagatatccataaaaagtgttgtttaaagtttgccacactccacctgggagacacaccaaacatgtggaagaaggtgctctggtcagatgaaaccaaaattgaactttttggcaacaatgcaaaatgttatgtttggcgtaaaagcaacacagctgaacacaccatccccactgtcaaacatggtggtggcagcatcatggtttgggcctgcttttcttcagtagggacagggaagatggttaaaattgatgggaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU837723 lncRNA upstream 160873 67070047 ~ 67070309 (+) True G737720
TU837653 lncRNA upstream 289285 66941602 ~ 66941897 (+) True G737663
TU837242 lncRNA upstream 402556 66828348 ~ 66828626 (+) True G737300
TU837169 lncRNA upstream 436805 66787941 ~ 66794377 (+) False G737235
TU838055 lncRNA downstream 1981 67233894 ~ 67234129 (+) True G738026
TU838066 lncRNA downstream 7316 67239229 ~ 67239429 (+) True G738037
TU838074 lncRNA downstream 10535 67242448 ~ 67242852 (+) True G738045
TU838104 lncRNA downstream 31208 67263121 ~ 67263369 (+) True G738075
TU838107 lncRNA downstream 33193 67265106 ~ 67265334 (+) True G738078
XM_036986021.1 mRNA upstream 176428 66975681 ~ 67054754 (+) False arhgap21b
XM_036986029.1 mRNA downstream 58764 67290677 ~ 67430071 (+) False LOC110530401
XM_036986030.1 mRNA downstream 58764 67290677 ~ 67430071 (+) False LOC110530401
XM_036986031.1 mRNA downstream 58764 67290677 ~ 67430071 (+) False LOC110530401
XM_036986032.1 mRNA downstream 58764 67290677 ~ 67430071 (+) False LOC110530401
XM_036986033.1 mRNA downstream 58764 67290677 ~ 67430071 (+) False LOC110530401
TU837788 other upstream 15553 67170467 ~ 67215629 (+) True G737783
TU837166 other upstream 429102 66798573 ~ 66802080 (+) False G737234
TU837167 other upstream 430122 66798573 ~ 66801060 (+) True G737234
TU837146 other upstream 527097 66699686 ~ 66704085 (+) True kncn
TU837120 other upstream 575429 66654662 ~ 66655753 (+) True G737194
TU838300 other downstream 314216 67546129 ~ 67547609 (+) True G738244
TU838937 other downstream 674464 67906377 ~ 67922622 (+) True LOC110530413
TU839857 other downstream 1626470 68858383 ~ 68858753 (+) True G739648
TU839882 other downstream 1671452 68903365 ~ 68906965 (+) True G739670
TU839922 other downstream 1772424 69004337 ~ 69005116 (+) True G739708

Expression Profile