RNA id: TU838104


Basic Information

Item Value
RNA id TU838104
length 249
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G738075
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 67263121 ~ 67263369 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acatagacattttaaactagaataccccctagtcacaccctgacctactacaccatagagaaacaagggctgaTGTCACAGATAATGTCATCCGCAAACATTGACCTCCCAATATCAGGTCCCACTCGGGAGAATACATCTTGAATCATAATGGAGAACAACAAAGGACTAATGACACTTCCATGCGGAGTACCATTATCTAGCTCATAGCTGTCTGACATAGAGCTTATCACCCTCACATCTATTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU838074 lncRNA upstream 20269 67242448 ~ 67242852 (+) True G738045
TU838066 lncRNA upstream 23692 67239229 ~ 67239429 (+) True G738037
TU838055 lncRNA upstream 28992 67233894 ~ 67234129 (+) True G738026
TU837723 lncRNA upstream 192812 67070047 ~ 67070309 (+) True G737720
TU837653 lncRNA upstream 321224 66941602 ~ 66941897 (+) True G737663
TU838107 lncRNA downstream 1737 67265106 ~ 67265334 (+) True G738078
TU838159 lncRNA downstream 73320 67336689 ~ 67337361 (+) True G738125
TU838160 lncRNA downstream 77828 67341197 ~ 67342012 (+) True G738126
TU838184 lncRNA downstream 133511 67396880 ~ 67397112 (+) True G738149
TU838133 lncRNA downstream 166116 67429485 ~ 67430037 (+) True LOC110530401
XM_036986021.1 mRNA upstream 208367 66975681 ~ 67054754 (+) False arhgap21b
XM_036986029.1 mRNA downstream 27308 67290677 ~ 67430071 (+) False LOC110530401
XM_036986030.1 mRNA downstream 27308 67290677 ~ 67430071 (+) False LOC110530401
XM_036986031.1 mRNA downstream 27308 67290677 ~ 67430071 (+) False LOC110530401
XM_036986032.1 mRNA downstream 27308 67290677 ~ 67430071 (+) False LOC110530401
XM_036986033.1 mRNA downstream 27308 67290677 ~ 67430071 (+) False LOC110530401
TU838049 other upstream 31208 67231182 ~ 67231913 (+) True G738020
TU837788 other upstream 47492 67170467 ~ 67215629 (+) True G737783
TU837166 other upstream 461041 66798573 ~ 66802080 (+) False G737234
TU837167 other upstream 462061 66798573 ~ 66801060 (+) True G737234
TU837146 other upstream 559036 66699686 ~ 66704085 (+) True kncn
TU838300 other downstream 282760 67546129 ~ 67547609 (+) True G738244
TU838937 other downstream 643008 67906377 ~ 67922622 (+) True LOC110530413
TU839857 other downstream 1595014 68858383 ~ 68858753 (+) True G739648
TU839882 other downstream 1639996 68903365 ~ 68906965 (+) True G739670
TU839922 other downstream 1740968 69004337 ~ 69005116 (+) True G739708

Expression Profile