RNA id: TU838316


Basic Information

Item Value
RNA id TU838316
length 217
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G738260
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 67575871 ~ 67576087 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

accatagtccctgtgcccaagaacacaaaggtaacctgtctaaatgactactgacccatagcactcatgtctgtagtcatgaagtcatttgaaaggctggtcaaggctcacaccaacaccattatcccagaaaccctagacccactccaatttgcattcagccccaacagatccacagatgatgcaatctctattgcactccacgctgccctatccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU838133 lncRNA upstream 145834 67429485 ~ 67430037 (+) True LOC110530401
TU838184 lncRNA upstream 178759 67396880 ~ 67397112 (+) True G738149
TU838160 lncRNA upstream 233859 67341197 ~ 67342012 (+) True G738126
TU838159 lncRNA upstream 238510 67336689 ~ 67337361 (+) True G738125
TU838107 lncRNA upstream 310537 67265106 ~ 67265334 (+) True G738078
TU838318 lncRNA downstream 684 67576771 ~ 67577106 (+) True G738262
TU838407 lncRNA downstream 197361 67773448 ~ 67775640 (+) True G738344
TU838431 lncRNA downstream 226235 67802322 ~ 67804768 (+) True G738367
TU838913 lncRNA downstream 297188 67873275 ~ 67873508 (+) True G738793
TU838918 lncRNA downstream 306776 67882863 ~ 67883114 (+) True G738798
XM_021613421.2 mRNA upstream 101569 67430853 ~ 67474302 (+) False LOC110530403
XM_021613424.2 mRNA upstream 101569 67430853 ~ 67474302 (+) False LOC110530403
XM_021613425.2 mRNA upstream 101569 67430853 ~ 67474302 (+) False LOC110530403
XR_002474523.2 mRNA upstream 101569 67430853 ~ 67474302 (+) False LOC110530403
XR_002474524.2 mRNA upstream 101569 67430853 ~ 67474302 (+) False LOC110530403
XM_036986046.1 mRNA downstream 1758 67577845 ~ 67688361 (+) False LOC110530407
XM_036986043.1 mRNA downstream 1759 67577846 ~ 67693642 (+) False LOC110530407
XM_036986044.1 mRNA downstream 1759 67577846 ~ 67693642 (+) False LOC110530407
XM_036986045.1 mRNA downstream 1759 67577846 ~ 67693642 (+) False LOC110530407
XM_036986047.1 mRNA downstream 1759 67577846 ~ 67693642 (+) True LOC110530407
TU838300 other upstream 28262 67546129 ~ 67547609 (+) True G738244
TU838049 other upstream 343958 67231182 ~ 67231913 (+) True G738020
TU837788 other upstream 360242 67170467 ~ 67215629 (+) True G737783
TU837166 other upstream 773791 66798573 ~ 66802080 (+) False G737234
TU837167 other upstream 774811 66798573 ~ 66801060 (+) True G737234
TU838937 other downstream 330290 67906377 ~ 67922622 (+) True LOC110530413
TU839857 other downstream 1282296 68858383 ~ 68858753 (+) True G739648
TU839882 other downstream 1327278 68903365 ~ 68906965 (+) True G739670
TU839922 other downstream 1428250 69004337 ~ 69005116 (+) True G739708
TU841127 other downstream 1960313 69536400 ~ 69538276 (+) True G740827

Expression Profile