RNA id: TU838407


Basic Information

Item Value
RNA id TU838407
length 2066
lncRNA type antisense_over
GC content 0.41
exon number 3
gene id G738344
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 67773448 ~ 67775640 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcagcACACTTGCTGTTGTTATAGCCATCTCTTCCAAAATAGGTTGTGTGTGAAACGTTGTTGCATTTAAAGTGGAattgacagcattttagcaacatgaaatctaaTTCAAATCTGTTCACATACACCCCCAGGACGAATGACACTTTTTTTATGACAAGCGaccacttagatatggtcatGTTTTCATACATTATTAAAATGTTTGGATATTATGTATACTAAGGCATCACGACACCACTGGCCCTTCGTGTTCTACAAAAAGTGCACTTCCCTACAGGAGTGCGCTGGTATTACGGTTACTGTCCTTTCAGAATTacaaacctgtcacacactgaagccCTATAGGTTCGCCACTGCGCAAACATGTCTGTAATAGATACAGTATAAAGGCTGTTAAGATAATGTTTCAATAAAGgagtgtatatatttggcctggTGAAGCGGTTTAATGGGCTGAATGAATGGAGTTTTTTACTCCGCTGGTCTCGGGAAGAAATTATGAGTCCTCACTgtccgagaccgagtcaagaccgagtacAAATGTATCCAATACCGGTGAattacagctgtgagtctttcggggtaaatctctaagagctttgcacacctggattgtacaatattcgcacattattctttaaaaataaattcaagttctgtcaagttggttgttgaacaTTGCTAGACAAGCATTTTTCAGTCTTGCAACAGATTTAAGCCAACTTAATTCGaaattgtaactaggccactcaggaacattcaatgttatcTTGGTAAGTGACTCcagtgtacactgagtatacagaacattaagaacacctgctctttccatgacatagactgaccaggtgaatccaggtgaaagataaaACTCAATAGGAAGGTTTTCCTAATGTTTGATATACTCagtatatatttggccttgtcTTTTAGGTTatagtcctgctgaaaggtgaatttatcttccagtggcattggaaaacctccctggtctttctggttgaatctgggtttgaaattcactgctcgactgagggaccttaaaaaTAATTGTGGGgatgaagtagtcattcaaaaatcatgttaaacactattattgcacacaaagtgagtccatgcaacttatgtgacttgttaagcaattctttactcctgaacttatttaggcttgcaataacAATGGGGTTGAATATTttttgactgaagacatttcagcttttcatttttaattaatttgtaaaaaattctaaaaacgtAATTCCaatgacattatgggatattgtgtgtaggccagtgacaccaaatatttattgaatgcattttaaattcaggctgtaacaacaaaatgtggaaaaagtcaaggggtgtgtgaatacattctgaaggcaccgtaCTTTTCAGGAGTCAACTACATTGAGGTTGTGCAGATGCATGATCAGTGTTTCAATCAATGCATTTGCTGCCATTCTAAAGCTGTCCTGAGGGAGGCAGTGTAGTGCAGCATTCAAACAgtgaaccacaacaacaaccaaaaGACACAGCAGACAAGCAGAGCCAAACCTGGGGCCAAGAGCTGGGTTCCTTCACAATGACAACACGGGGGAGagcaaaacacacagcacattaTGACACAAGTGTGGGATAATTAGCAAAGCAGGCCTTGCATAGTGTTAACATACATCCAATGAGACTTTTGCACAGCAGAAGCAAAGGTTCCAGGAGGTGAAGAGGACCCAATCACTCACCTTGTTTTCCATTCCTCGGTTGATTTGGAGCGATTTTTCCGGGACAGTCTTTgtttctcctctaccctcttcttCTCTGCACTTGCCGAGTCTATGTCTCCTTTTTCCATGTGTCTGATGTCAGGCCTGAGTCGACAGTCTGTGGGGGGTAGGACACCCTTCATGTCTTCCTCCAGCTCATTCAGCTGCATGGCAAATGTGGAGAAAGCATAGaactacgagagagagagagagtggattcAACAAATCAATAACTGAGTCAAACTGACAACCAGTTGAATCAGCCAAGAAGGGTAAAATATCATCAGTACATCCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU838318 lncRNA upstream 196342 67576771 ~ 67577106 (+) True G738262
TU838316 lncRNA upstream 197361 67575871 ~ 67576087 (+) True G738260
TU838133 lncRNA upstream 343411 67429485 ~ 67430037 (+) True LOC110530401
TU838184 lncRNA upstream 376336 67396880 ~ 67397112 (+) True G738149
TU838160 lncRNA upstream 431436 67341197 ~ 67342012 (+) True G738126
TU838431 lncRNA downstream 26682 67802322 ~ 67804768 (+) True G738367
TU838913 lncRNA downstream 97635 67873275 ~ 67873508 (+) True G738793
TU838918 lncRNA downstream 107223 67882863 ~ 67883114 (+) True G738798
TU838959 lncRNA downstream 148967 67924607 ~ 67983064 (+) True G738832
TU838962 lncRNA downstream 151870 67927510 ~ 67928146 (+) True G738835
XM_036986048.1 mRNA upstream 3962 67759384 ~ 67769486 (+) False LOC110530969
XM_036986049.1 mRNA upstream 3962 67759384 ~ 67769486 (+) True LOC110530969
XM_021613433.2 mRNA upstream 46506 67693817 ~ 67726942 (+) True LOC110530410
XM_036986043.1 mRNA upstream 79806 67577846 ~ 67693642 (+) False LOC110530407
XM_036986044.1 mRNA upstream 79806 67577846 ~ 67693642 (+) False LOC110530407
XR_005052937.1 mRNA downstream 128876 67904516 ~ 67906729 (+) False LOC110530413
XM_036986052.1 mRNA downstream 128876 67904516 ~ 67924427 (+) False LOC110530413
XM_021613439.2 mRNA downstream 129409 67905049 ~ 67924427 (+) False LOC110530413
XM_021613468.2 mRNA downstream 410267 68185907 ~ 68198975 (+) False LOC110530418
XM_021613466.2 mRNA downstream 410439 68186079 ~ 68198975 (+) False LOC110530418
TU838300 other upstream 225839 67546129 ~ 67547609 (+) True G738244
TU838049 other upstream 541535 67231182 ~ 67231913 (+) True G738020
TU837788 other upstream 557819 67170467 ~ 67215629 (+) True G737783
TU837166 other upstream 971368 66798573 ~ 66802080 (+) False G737234
TU838937 other downstream 130737 67906377 ~ 67922622 (+) True LOC110530413
TU839857 other downstream 1082743 68858383 ~ 68858753 (+) True G739648
TU839882 other downstream 1127725 68903365 ~ 68906965 (+) True G739670
TU839922 other downstream 1228697 69004337 ~ 69005116 (+) True G739708
TU841127 other downstream 1760760 69536400 ~ 69538276 (+) True G740827

Expression Profile