RNA id: TU838918


Basic Information

Item Value
RNA id TU838918
length 252
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G738798
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 67882863 ~ 67883114 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagaagtttacatgcactcaattagtatttggtagcgttgcctttaaattgtttaacttgggtcaaatgtttcgggtagccttccacaagcttcccacaataagttgggtaaatgttggcccattcctcctgacagagctggtgtaactgagtcaggtttctaggcctccttgctcgcacacgctttttcagttctgcccacacattttctatgggattgaggtcagggctctgtgatggccactccaatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU838913 lncRNA upstream 9355 67873275 ~ 67873508 (+) True G738793
TU838431 lncRNA upstream 78095 67802322 ~ 67804768 (+) True G738367
TU838407 lncRNA upstream 107223 67773448 ~ 67775640 (+) True G738344
TU838318 lncRNA upstream 305757 67576771 ~ 67577106 (+) True G738262
TU838316 lncRNA upstream 306776 67575871 ~ 67576087 (+) True G738260
TU838959 lncRNA downstream 41493 67924607 ~ 67983064 (+) True G738832
TU838962 lncRNA downstream 44396 67927510 ~ 67928146 (+) True G738835
TU838993 lncRNA downstream 106924 67990038 ~ 67992670 (+) True G738866
TU839101 lncRNA downstream 280280 68163394 ~ 68167095 (+) False G738972
TU839104 lncRNA downstream 280280 68163394 ~ 68167270 (+) True G738972
XM_036986048.1 mRNA upstream 113377 67759384 ~ 67769486 (+) False LOC110530969
XM_036986049.1 mRNA upstream 113377 67759384 ~ 67769486 (+) True LOC110530969
XM_021613433.2 mRNA upstream 155921 67693817 ~ 67726942 (+) True LOC110530410
XM_036986045.1 mRNA upstream 189221 67577846 ~ 67693642 (+) False LOC110530407
XR_005052937.1 mRNA downstream 21402 67904516 ~ 67906729 (+) False LOC110530413
XM_036986052.1 mRNA downstream 21402 67904516 ~ 67924427 (+) False LOC110530413
XM_021613439.2 mRNA downstream 21935 67905049 ~ 67924427 (+) False LOC110530413
XM_021613468.2 mRNA downstream 302793 68185907 ~ 68198975 (+) False LOC110530418
XM_021613466.2 mRNA downstream 302965 68186079 ~ 68198975 (+) False LOC110530418
TU838300 other upstream 335254 67546129 ~ 67547609 (+) True G738244
TU838049 other upstream 650950 67231182 ~ 67231913 (+) True G738020
TU837788 other upstream 667234 67170467 ~ 67215629 (+) True G737783
TU837166 other upstream 1080783 66798573 ~ 66802080 (+) False G737234
TU838937 other downstream 23263 67906377 ~ 67922622 (+) True LOC110530413
TU839857 other downstream 975269 68858383 ~ 68858753 (+) True G739648
TU839882 other downstream 1020251 68903365 ~ 68906965 (+) True G739670
TU839922 other downstream 1121223 69004337 ~ 69005116 (+) True G739708
TU841127 other downstream 1653286 69536400 ~ 69538276 (+) True G740827

Expression Profile