RNA id: TU838959



Basic Information


Item Value
RNA id TU838959
length 468
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G738832
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 67924607 ~ 67983064 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaatttgggcgtgcaaaattattcagcccccttaagttaatactttgtagcgccaccttttgctgcgattacagctgtaagtcgcttgaggtatgtctctatcagttttgcacatcgagacactgacattttttcccattcctccttgcaaaacagctcgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtccggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggtttt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU838918 lncRNA upstream 41493 67882863 ~ 67883114 (+) True G738798
TU838913 lncRNA upstream 51099 67873275 ~ 67873508 (+) True G738793
TU838431 lncRNA upstream 119839 67802322 ~ 67804768 (+) True G738367
TU838407 lncRNA upstream 148967 67773448 ~ 67775640 (+) True G738344
TU838318 lncRNA upstream 347501 67576771 ~ 67577106 (+) True G738262
TU838993 lncRNA downstream 6974 67990038 ~ 67992670 (+) True G738866
TU839101 lncRNA downstream 180330 68163394 ~ 68167095 (+) False G738972
TU839104 lncRNA downstream 180330 68163394 ~ 68167270 (+) True G738972
TU839363 lncRNA downstream 227247 68210311 ~ 68210548 (+) True G739188
TU839365 lncRNA downstream 228768 68211832 ~ 68212448 (+) True G739190
XM_036986052.1 mRNA upstream 180 67904516 ~ 67924427 (+) False LOC110530413
XM_021613439.2 mRNA upstream 180 67905049 ~ 67924427 (+) False LOC110530413
XR_005052937.1 mRNA upstream 17878 67904516 ~ 67906729 (+) False LOC110530413
XM_036986048.1 mRNA upstream 155121 67759384 ~ 67769486 (+) False LOC110530969
XM_036986049.1 mRNA upstream 155121 67759384 ~ 67769486 (+) True LOC110530969
XM_021613468.2 mRNA downstream 202843 68185907 ~ 68198975 (+) False LOC110530418
XM_021613466.2 mRNA downstream 203015 68186079 ~ 68198975 (+) False LOC110530418
XM_021613467.2 mRNA downstream 203074 68186138 ~ 68198975 (+) True LOC110530418
XM_036986881.1 mRNA downstream 492339 68475403 ~ 68506363 (+) True LOC118965633
XM_021613481.2 mRNA downstream 890373 68873437 ~ 68898424 (+) True LOC110530424
TU838937 other upstream 1985 67906377 ~ 67922622 (+) True LOC110530413
TU838300 other upstream 376998 67546129 ~ 67547609 (+) True G738244
TU838049 other upstream 692694 67231182 ~ 67231913 (+) True G738020
TU837788 other upstream 708978 67170467 ~ 67215629 (+) True G737783
TU837166 other upstream 1122527 66798573 ~ 66802080 (+) False G737234
TU839857 other downstream 875319 68858383 ~ 68858753 (+) True G739648
TU839882 other downstream 920301 68903365 ~ 68906965 (+) True G739670
TU839922 other downstream 1021273 69004337 ~ 69005116 (+) True G739708
TU841127 other downstream 1553336 69536400 ~ 69538276 (+) True G740827
TU842479 other downstream 2643157 70626221 ~ 70626744 (+) True G742095

Expression Profile