RNA id: TU839104


Basic Information

Item Value
RNA id TU839104
length 3770
lncRNA type antisense_over
GC content 0.37
exon number 2
gene id G738972
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 68163394 ~ 68167270 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGCAGTTTTTCAGTGACATACTGTACAGTTTCACATCACAATGACACTTACAGTAACATCATGTTGGCTACAGGGTAAatgaaagacaaaacatttattacaaGGTATGTACTAAAGCATACCAAGGTTAGTATCTTTGAGGCTGACTGGAAACCAATCACCATACTTCTATCTTCTCTATAGTATGTGCATGATTTATGCATATTGTACAAATGTATATCAAGCCCAAGGTTTCATAAAATAACACAACCCGTCTGTACAAGAGTGAAATGTTGCATGACATCATAGGAAATGTATCTCAAATCATTACAGCAAGACACTCAGTTTAGAGTATAACGTAACACTTTGTTATACTCCACATAACTCTTattattctgttggtggttaacTTACATTACATTTTCttaaataacaaaaatgtaaaagTTTATTCGGGGGAGAAATCTCATCCAACATTGTAAAGACGATTAATTCTGTCTGAAACAAGCTTATGTGGTGCTGAACATACTGAATGTACGACAGTCTGATCGGACAGTCTGTGGTCAATGCACTCCCACAGACCCATTATGGGAATATTCAGCACGGGCAAAACGTTCAGAAAGTTGCTGATAAAAACGTAATGTATCGAGCAGACACTATTCTCCAGAGAGCTGTGTCCGATGCACATTAGACATATGTTTGGAATATCCCCCAAATTAATTAATCTCTTATTCAGCTACCAATAACAGAGCACACTGAAGCGCCAAGGCCATAAGATACATGCTTCTAAATTCAACTTTTAAGAGAAGCAGGGGGTACTGGAAGCATTCAGGGGCCCTATTAATATatcgtctcagagtaggagtgctgatctaggatcaggtctcccctaTCTATTTATTCTTACATattatctaaaaggctaaactgatcccaaTTCAGCTGTCCTaatctgagacactttatgaatatgggCTCAGTGCTTTGTGATACACATTGGTTTGCAAAGGGAGGGTGTAAACTAACAGAATTGTTTTTTATCTTCCAAGGATTTTTTTTACAATCTGTCAGAAGACATCTAGTGGCCCATTTGTGTAATTCAGATTATGACAAGTGTCTAATAATCTCTGGCCCTCTGCGTGGGTAATAACATGTAAAATATCTGAAATATTTTAATCAGATGAGGATCGGCCCATTTTTTAAAATttccacctaaaatgacatacccaaatctaatgGCCTGGAGCTCAGGACCTGAaggaaggatatgcatattattgataccagttgaaaggaaacactttgaagtttgtggaaatgtgaaattaatgtagaagAATAACACATAAgttctggtaaaagataatacaaacaaaaacatgCGTTTTCAGAAAATAATCATTGTTCCAtcgtctttgaaatgcaagagaaaggccatacatTCAGATAGGAGTTTAGGTGTAAtttagatggcagcagtgtgtgtgtaaagtttcagactgatccagtgaagcattACATTAGTAGActatattttgtatcaagtctgccaggagtttccccaaatgtgccgaattggtcaattgatacattttcaagtacataactatagagaacatacaaaaatgctatggtaataaaaaaatacaagtttAAACACAttcaggaatgtcatacatgatggataattagcttccctacagaaaAAACCCCCACTAACCTTCAGACATCTAGATGGCCAGGCAGGGCCCAAGacagaacccagttcctacatttgaatataacatgtgttttatcaaacaaaactatgctacatttgatctctgggaccctcaggaggacaaatcagagcaagattactaaatgtaagtacattatttaccttcagaggtgaatgtatcaaaccagttgccatgataagtgttttgttgttgtgcactctccaaataatagcatggtatttattcattgtaatagctactgtaaattggactgcagttagattaacaagaatttaagctttctgcccatataagacatatCTATGTACTGGAAAGTTGGCTGTTACTTatgtcattctagtcacattagcaaCAACCATCCAGGTTTAGGGACACCGAACCTTTAGAGTTAAAAAAATATGACAAAGATGTTAAACAAtcctaaataaaaaaattaactaAATGAATACCAttcattggtgtttaatatgagggtttcagcatgaaatttCCTTTTTACAAACTTTTATTTTATGTCAATGTTTTATTCATGTTTGGGcatcaaactggtggcagttgtgaaaaaagtaaaTCATTAGATTAGTGAAAAAATTATGTAATTGCTGATTAGATGCTTTTTGCCATTAATTAGGTTATTTTCTCTTGAAAAAtatggtgaaataaaaaaatgtcacatacaccagattaGTCCGGAGAAATGTGGTGTTTGACATGGTCAGCCATGGCGttcctggagcaaattagggttaagtgcctcaCTCATGGGCAagtcggcagatttttcaccttgtctgctcaggtattcaaaccagcaacctttcggttactagcccaacgcgctacctgccaccctactaTCTAATAtaaaactcatggacaatatggtcACAGATATAATAAATGAACACTATATACGAATACAGTTTtttgcaaccctagttacacacatactgtagatctCAAAGTCAGAATCCAGCCCCACTCACAGGTCATGTTTTGTTGCCCAAAGAAATAATGTTTCACCACTGATGCTCCAATACAGATAGGTGTTCTCAGTTTGTTTGAGGGCTTTCTATGTACAATCCATTCATAAAACCAAAGCATCTGATTTGTTCACCCCAAGCACATATTCAATGTACAAGTCATTGAAGAAGCAAAGGGAAATCAGGGGTTACAAATaacaaaagaacaaacaaaatagcagATGAAAACAATGTTAATCACAACTTACATCAAGAGACATAACACTTCAGGAGGAAAACAGAAACCATATTCAACAGTACTCCAAATTCTTATACAAAATTAGCTCCATCTAAAAATCATAAAATACATGTTTACATCATCACATATGTTGACCTTGACATATAACATAGCCTTACagaattttgtttctggtgtaaAATCTCCTCACTCCATCCCCGTCCCACCCCTCCACTTCCCATTGGCATTATTGCTTCTTATGAACAGGGGGCTATTGGATGGAGAAACATTGCCCTACAAGAGTGTGAAGTTCAGTTCTGTCCTCTGTAATCTAGACAAAATGAATTTTACGGGTAATTTTTTGCCCTTTTTCGAAATCTGCAGTGCTCTGGATAAGGCAGCTCTGTTTGGTTTTAAGGCATTGCTGCTTTGAGACTTAACTCAGACTAGAaaaggagaaatggaagtgaacACAATCATCTCATTACATAAGGCCCAGACATAGAGGATACAGagggcaaagtgtgtgtgtgtgtgtgtgggcgtctCTGTGAGCTGCAGCCGTTATAAAAGTCCAGATAACAGTTgtacagaggtcagaggttagaggtcagagcaGGGCTCTtggtgactgactgagtgactgccATGGCCATCTCTCATTGCTGGTAATTTCCATATTGACCctgtggagggaggaagggagtacTGTAAATGGACATCTTAATTACTTTTCATCCGAACATCTGAACAAACAGGCATTTACTAGGGAAATGCTAATATTTACATATTTAAACAGGATGCAAACAAGCACATCTGTAGCAGCTAGTTATGAACCTTTTGTTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU838993 lncRNA upstream 170724 67990038 ~ 67992670 (+) True G738866
TU838959 lncRNA upstream 180330 67924607 ~ 67983064 (+) True G738832
TU838962 lncRNA upstream 235248 67927510 ~ 67928146 (+) True G738835
TU838918 lncRNA upstream 280280 67882863 ~ 67883114 (+) True G738798
TU838913 lncRNA upstream 289886 67873275 ~ 67873508 (+) True G738793
TU839363 lncRNA downstream 43041 68210311 ~ 68210548 (+) True G739188
TU839365 lncRNA downstream 44562 68211832 ~ 68212448 (+) True G739190
TU839367 lncRNA downstream 46394 68213664 ~ 68214103 (+) True G739192
TU839381 lncRNA downstream 58709 68225979 ~ 68226203 (+) True G739206
TU839385 lncRNA downstream 59461 68226731 ~ 68226948 (+) True G739210
XM_036986052.1 mRNA upstream 238967 67904516 ~ 67924427 (+) False LOC110530413
XM_021613439.2 mRNA upstream 238967 67905049 ~ 67924427 (+) False LOC110530413
XR_005052937.1 mRNA upstream 256665 67904516 ~ 67906729 (+) False LOC110530413
XM_036986048.1 mRNA upstream 393908 67759384 ~ 67769486 (+) False LOC110530969
XM_021613468.2 mRNA downstream 18637 68185907 ~ 68198975 (+) False LOC110530418
XM_021613466.2 mRNA downstream 18809 68186079 ~ 68198975 (+) False LOC110530418
XM_021613467.2 mRNA downstream 18868 68186138 ~ 68198975 (+) True LOC110530418
XM_036986881.1 mRNA downstream 308133 68475403 ~ 68506363 (+) True LOC118965633
XM_021613481.2 mRNA downstream 706167 68873437 ~ 68898424 (+) True LOC110530424
TU838937 other upstream 240772 67906377 ~ 67922622 (+) True LOC110530413
TU838300 other upstream 615785 67546129 ~ 67547609 (+) True G738244
TU838049 other upstream 931481 67231182 ~ 67231913 (+) True G738020
TU837788 other upstream 947765 67170467 ~ 67215629 (+) True G737783
TU837167 other upstream 1362334 66798573 ~ 66801060 (+) True G737234
TU839857 other downstream 691113 68858383 ~ 68858753 (+) True G739648
TU839882 other downstream 736095 68903365 ~ 68906965 (+) True G739670
TU839922 other downstream 837067 69004337 ~ 69005116 (+) True G739708
TU841127 other downstream 1369130 69536400 ~ 69538276 (+) True G740827
TU842479 other downstream 2458951 70626221 ~ 70626744 (+) True G742095

Expression Profile