RNA id: TU839367



Basic Information


Item Value
RNA id TU839367
length 440
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G739192
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 68213664 ~ 68214103 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ttacagggaagacatcctcctccctcatgtggaacCCTTCCTGcatgctcatcctgacatgaccctccagcatgacaatgccaccagccatactgctcattctgtgagtgatttcctgcaagacaggaatgtcagtgttctgccatggccagcgaagagccctgatctcaatcccattgagcacgtctgggacctgttggatcggagggtgagggctagggccattcccaccagaaaagtgccttggtggaagagtggggtaacatctcacagcaagaatagGCAAGTCTGGTGCTCtccatgaagaggagatgcactgcggtacttaatgcagctggtggccacaccagatactgactgttacttttgattttgacaacCCCTTTGTTCagtgacacattattcaatttctgtttgtcacatgtctgtggaacttgttc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU839365 lncRNA upstream 1216 68211832 ~ 68212448 (+) True G739190
TU839363 lncRNA upstream 3116 68210311 ~ 68210548 (+) True G739188
TU839104 lncRNA upstream 46394 68163394 ~ 68167270 (+) True G738972
TU839101 lncRNA upstream 46569 68163394 ~ 68167095 (+) False G738972
TU838993 lncRNA upstream 220994 67990038 ~ 67992670 (+) True G738866
TU839381 lncRNA downstream 11876 68225979 ~ 68226203 (+) True G739206
TU839385 lncRNA downstream 12628 68226731 ~ 68226948 (+) True G739210
TU839390 lncRNA downstream 18730 68232833 ~ 68233044 (+) True G739215
TU839393 lncRNA downstream 20847 68234950 ~ 68235171 (+) True G739218
TU839400 lncRNA downstream 25634 68239737 ~ 68239966 (+) True G739225
XM_021613468.2 mRNA upstream 14689 68185907 ~ 68198975 (+) False LOC110530418
XM_021613466.2 mRNA upstream 14689 68186079 ~ 68198975 (+) False LOC110530418
XM_021613467.2 mRNA upstream 14689 68186138 ~ 68198975 (+) True LOC110530418
XM_036986052.1 mRNA upstream 289237 67904516 ~ 67924427 (+) False LOC110530413
XM_036986881.1 mRNA downstream 261300 68475403 ~ 68506363 (+) True LOC118965633
XM_021613481.2 mRNA downstream 659334 68873437 ~ 68898424 (+) True LOC110530424
XR_002474334.2 mRNA downstream 791143 69005246 ~ 69006608 (+) True LOC110529135
XM_021613485.2 mRNA downstream 805097 69019200 ~ 69045596 (+) False LOC110530427
XM_021613486.2 mRNA downstream 805106 69019209 ~ 69045596 (+) True LOC110530427
TU838937 other upstream 291042 67906377 ~ 67922622 (+) True LOC110530413
TU838300 other upstream 666055 67546129 ~ 67547609 (+) True G738244
TU838049 other upstream 981751 67231182 ~ 67231913 (+) True G738020
TU837788 other upstream 998035 67170467 ~ 67215629 (+) True G737783
TU837167 other upstream 1412604 66798573 ~ 66801060 (+) True G737234
TU839857 other downstream 644280 68858383 ~ 68858753 (+) True G739648
TU839882 other downstream 689262 68903365 ~ 68906965 (+) True G739670
TU839922 other downstream 790234 69004337 ~ 69005116 (+) True G739708
TU841127 other downstream 1322297 69536400 ~ 69538276 (+) True G740827
TU842479 other downstream 2412118 70626221 ~ 70626744 (+) True G742095

Expression Profile