RNA id: TU839458



Basic Information


Item Value
RNA id TU839458
length 262
lncRNA type inter_gene
GC content 0.28
exon number 1
gene id G739266
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 68273761 ~ 68274022 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


atataatacatcaataaaatcaatttagcctgaaataaataatgaaacatgttcaatttggtttaaataatgcaaaaacaaagtgttggagaagaaagtaaaagtgcaatatgtgcaatgtaacaaagctaatgtttaagttccttaatcagaacatgagaacatatgaaagctggtggttccttttaacatgagtcttcaatattcccaggtaagaagttttagattataggaattatattactatttctctctataccat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU839401 lncRNA upstream 32970 68240482 ~ 68240791 (+) True G739226
TU839400 lncRNA upstream 33795 68239737 ~ 68239966 (+) True G739225
TU839393 lncRNA upstream 38590 68234950 ~ 68235171 (+) True G739218
TU839390 lncRNA upstream 40717 68232833 ~ 68233044 (+) True G739215
TU839385 lncRNA upstream 46813 68226731 ~ 68226948 (+) True G739210
TU839581 lncRNA downstream 169168 68443190 ~ 68523646 (+) True G739384
TU839827 lncRNA downstream 542097 68816119 ~ 68816346 (+) True G739622
TU839829 lncRNA downstream 543477 68817499 ~ 68817699 (+) True G739624
TU839839 lncRNA downstream 554766 68828788 ~ 68829043 (+) True G739633
TU839840 lncRNA downstream 555266 68829288 ~ 68829585 (+) True G739634
XM_021613468.2 mRNA upstream 74786 68185907 ~ 68198975 (+) False LOC110530418
XM_021613466.2 mRNA upstream 74786 68186079 ~ 68198975 (+) False LOC110530418
XM_021613467.2 mRNA upstream 74786 68186138 ~ 68198975 (+) True LOC110530418
XM_036986052.1 mRNA upstream 349334 67904516 ~ 67924427 (+) False LOC110530413
XM_036986881.1 mRNA downstream 201381 68475403 ~ 68506363 (+) True LOC118965633
XM_021613481.2 mRNA downstream 599415 68873437 ~ 68898424 (+) True LOC110530424
XR_002474334.2 mRNA downstream 731224 69005246 ~ 69006608 (+) True LOC110529135
XM_021613485.2 mRNA downstream 745178 69019200 ~ 69045596 (+) False LOC110530427
XM_021613486.2 mRNA downstream 745187 69019209 ~ 69045596 (+) True LOC110530427
TU838937 other upstream 351139 67906377 ~ 67922622 (+) True LOC110530413
TU838300 other upstream 726152 67546129 ~ 67547609 (+) True G738244
TU838049 other upstream 1041848 67231182 ~ 67231913 (+) True G738020
TU837788 other upstream 1058132 67170467 ~ 67215629 (+) True G737783
TU837167 other upstream 1472701 66798573 ~ 66801060 (+) True G737234
TU839857 other downstream 584361 68858383 ~ 68858753 (+) True G739648
TU839882 other downstream 629343 68903365 ~ 68906965 (+) True G739670
TU839922 other downstream 730315 69004337 ~ 69005116 (+) True G739708
TU841127 other downstream 1262378 69536400 ~ 69538276 (+) True G740827
TU842479 other downstream 2352199 70626221 ~ 70626744 (+) True G742095

Expression Profile