RNA id: TU839829



Basic Information


Item Value
RNA id TU839829
length 201
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G739624
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 68817499 ~ 68817699 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGCTCGTTCACGCgaaacatgtacgacaggtctgatttataacgggaaacatgtacgacaggtctgatttataacgggaaacatgtacgacaggtctgatttataacgggaaacatgtacgacaggtctgatttataacgggaaacatgtacgacaggtctgatttataacgggaaacatccacgacaggtctgatttata

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU839827 lncRNA upstream 1153 68816119 ~ 68816346 (+) True G739622
TU839581 lncRNA upstream 293853 68443190 ~ 68523646 (+) True G739384
TU839458 lncRNA upstream 543477 68273761 ~ 68274022 (+) True G739266
TU839401 lncRNA upstream 576708 68240482 ~ 68240791 (+) True G739226
TU839400 lncRNA upstream 577533 68239737 ~ 68239966 (+) True G739225
TU839839 lncRNA downstream 11089 68828788 ~ 68829043 (+) True G739633
TU839840 lncRNA downstream 11589 68829288 ~ 68829585 (+) True G739634
TU839844 lncRNA downstream 27341 68845040 ~ 68856024 (+) False G739638
TU839847 lncRNA downstream 27341 68845040 ~ 68846736 (+) False G739638
TU839846 lncRNA downstream 36682 68854381 ~ 68856024 (+) True G739638
XM_036986881.1 mRNA upstream 311136 68475403 ~ 68506363 (+) True LOC118965633
XM_021613468.2 mRNA upstream 618524 68185907 ~ 68198975 (+) False LOC110530418
XM_021613466.2 mRNA upstream 618524 68186079 ~ 68198975 (+) False LOC110530418
XM_021613467.2 mRNA upstream 618524 68186138 ~ 68198975 (+) True LOC110530418
XM_021613439.2 mRNA upstream 893072 67905049 ~ 67924427 (+) False LOC110530413
XM_021613481.2 mRNA downstream 55738 68873437 ~ 68898424 (+) True LOC110530424
XR_002474334.2 mRNA downstream 187547 69005246 ~ 69006608 (+) True LOC110529135
XM_021613485.2 mRNA downstream 201501 69019200 ~ 69045596 (+) False LOC110530427
XM_021613486.2 mRNA downstream 201510 69019209 ~ 69045596 (+) True LOC110530427
XM_036986060.1 mRNA downstream 228712 69046411 ~ 69116995 (+) False LOC110530428
TU838937 other upstream 894877 67906377 ~ 67922622 (+) True LOC110530413
TU838300 other upstream 1269890 67546129 ~ 67547609 (+) True G738244
TU838049 other upstream 1585586 67231182 ~ 67231913 (+) True G738020
TU837788 other upstream 1601870 67170467 ~ 67215629 (+) True G737783
TU837167 other upstream 2016439 66798573 ~ 66801060 (+) True G737234
TU839857 other downstream 40684 68858383 ~ 68858753 (+) True G739648
TU839882 other downstream 85666 68903365 ~ 68906965 (+) True G739670
TU839922 other downstream 186638 69004337 ~ 69005116 (+) True G739708
TU841127 other downstream 718701 69536400 ~ 69538276 (+) True G740827
TU842479 other downstream 1808522 70626221 ~ 70626744 (+) True G742095

Expression Profile