RNA id: TU839949



Basic Information


Item Value
RNA id TU839949
length 217
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G739735
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 68999172 ~ 68999388 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ctaacattgagtggctgctgccaacacactgactcaactccagccactttaataatgggaattgatggaaattgatggaaaatatatcactagccactttaaacaatgctacttaatataatgtttacataccctacattactcatctcatatgtatatgtatatactgtaccctatatcatctactgcatctttatgtaatacatgtatcactagc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU839844 lncRNA upstream 143148 68845040 ~ 68856024 (+) False G739638
TU839846 lncRNA upstream 143148 68854381 ~ 68856024 (+) True G739638
TU839847 lncRNA upstream 152436 68845040 ~ 68846736 (+) False G739638
TU839840 lncRNA upstream 169587 68829288 ~ 68829585 (+) True G739634
TU839839 lncRNA upstream 170129 68828788 ~ 68829043 (+) True G739633
TU839950 lncRNA downstream 783 69000171 ~ 69000626 (+) True G739736
TU839924 lncRNA downstream 4129 69003517 ~ 69004130 (+) True G739710
TU839960 lncRNA downstream 46214 69045602 ~ 69045872 (+) True G739746
TU839967 lncRNA downstream 118175 69117563 ~ 69119121 (+) True G739748
TU840025 lncRNA downstream 146247 69145635 ~ 69147221 (+) True G739802
XM_021613481.2 mRNA upstream 100748 68873437 ~ 68898424 (+) True LOC110530424
XM_036986881.1 mRNA upstream 492809 68475403 ~ 68506363 (+) True LOC118965633
XM_021613468.2 mRNA upstream 800197 68185907 ~ 68198975 (+) False LOC110530418
XM_021613466.2 mRNA upstream 800197 68186079 ~ 68198975 (+) False LOC110530418
XM_021613467.2 mRNA upstream 800197 68186138 ~ 68198975 (+) True LOC110530418
XR_002474334.2 mRNA downstream 5858 69005246 ~ 69006608 (+) True LOC110529135
XM_021613485.2 mRNA downstream 19812 69019200 ~ 69045596 (+) False LOC110530427
XM_021613486.2 mRNA downstream 19821 69019209 ~ 69045596 (+) True LOC110530427
XM_036986060.1 mRNA downstream 47023 69046411 ~ 69116995 (+) False LOC110530428
XM_036986059.1 mRNA downstream 49321 69048709 ~ 69116995 (+) True LOC110530428
TU839882 other upstream 92207 68903365 ~ 68906965 (+) True G739670
TU839857 other upstream 140419 68858383 ~ 68858753 (+) True G739648
TU838937 other upstream 1076550 67906377 ~ 67922622 (+) True LOC110530413
TU838300 other upstream 1451563 67546129 ~ 67547609 (+) True G738244
TU838049 other upstream 1767259 67231182 ~ 67231913 (+) True G738020
TU839922 other downstream 4949 69004337 ~ 69005116 (+) True G739708
TU841127 other downstream 537012 69536400 ~ 69538276 (+) True G740827
TU842479 other downstream 1626833 70626221 ~ 70626744 (+) True G742095
TU843350 other downstream 2696214 71695602 ~ 71706542 (+) False G742860
TU843344 other downstream 2705255 71704643 ~ 71715616 (+) False G742860

Expression Profile