RNA id: TU839924



Basic Information


Item Value
RNA id TU839924
length 614
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G739710
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 69003517 ~ 69004130 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tgctcccagagtgattctcgtgtaaaatacagaggtagccattattccaatcggtcctactgaaaaacgaattgtcccggaGGATATACtattgaatagatatttgaaaaacaccttgaggattgattataaacaacgtttgccatgtttctgtcgatattatggagctaatttggaatattttttggcgttttcgtgactgcaatttccgggcgatttctcagccaaacgtgaagaacaaacggagctatttcgcctacaaaaataatatttttggaaaaaaggaacattggctatctaactgggagtctcgtgagtgaaaacatccaaagctcatcaaaggtaaacgatttatgttgattgcttttctgatttccgtgaccaagttacctgctgctagctggacaaaatgctatgctaagctatcgataaacttacacaaatgcttgtctagctttgaaaatctgagatgacagggtgattaacaaaaggctaagctgtgtctcaatatatttcacttgtgattttcatgaataggaatattttctaggaatatttatgtccgttgcgttatgcaaattagtgtcagtcgatgattacgctccctcatgcgg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU839950 lncRNA upstream 2891 69000171 ~ 69000626 (+) True G739736
TU839949 lncRNA upstream 4129 68999172 ~ 68999388 (+) True G739735
TU839844 lncRNA upstream 147493 68845040 ~ 68856024 (+) False G739638
TU839846 lncRNA upstream 147493 68854381 ~ 68856024 (+) True G739638
TU839847 lncRNA upstream 156781 68845040 ~ 68846736 (+) False G739638
TU839960 lncRNA downstream 41472 69045602 ~ 69045872 (+) True G739746
TU839967 lncRNA downstream 113433 69117563 ~ 69119121 (+) True G739748
TU840025 lncRNA downstream 141505 69145635 ~ 69147221 (+) True G739802
TU840044 lncRNA downstream 177383 69181513 ~ 69192634 (+) True G739821
TU840042 lncRNA downstream 177986 69182116 ~ 69182446 (+) True G739819
XM_021613481.2 mRNA upstream 105093 68873437 ~ 68898424 (+) True LOC110530424
XM_036986881.1 mRNA upstream 497154 68475403 ~ 68506363 (+) True LOC118965633
XM_021613468.2 mRNA upstream 804542 68185907 ~ 68198975 (+) False LOC110530418
XR_002474334.2 mRNA downstream 1116 69005246 ~ 69006608 (+) True LOC110529135
XM_021613485.2 mRNA downstream 15070 69019200 ~ 69045596 (+) False LOC110530427
XM_021613486.2 mRNA downstream 15079 69019209 ~ 69045596 (+) True LOC110530427
XM_036986060.1 mRNA downstream 42281 69046411 ~ 69116995 (+) False LOC110530428
XM_036986059.1 mRNA downstream 44579 69048709 ~ 69116995 (+) True LOC110530428
TU839882 other upstream 96552 68903365 ~ 68906965 (+) True G739670
TU839857 other upstream 144764 68858383 ~ 68858753 (+) True G739648
TU838937 other upstream 1080895 67906377 ~ 67922622 (+) True LOC110530413
TU838300 other upstream 1455908 67546129 ~ 67547609 (+) True G738244
TU838049 other upstream 1771604 67231182 ~ 67231913 (+) True G738020
TU839922 other downstream 207 69004337 ~ 69005116 (+) True G739708
TU841127 other downstream 532270 69536400 ~ 69538276 (+) True G740827
TU842479 other downstream 1622091 70626221 ~ 70626744 (+) True G742095
TU843350 other downstream 2691472 71695602 ~ 71706542 (+) False G742860
TU843344 other downstream 2700513 71704643 ~ 71715616 (+) False G742860

Expression Profile