RNA id: TU840025



Basic Information


Item Value
RNA id TU840025
length 312
lncRNA type intronic
GC content 0.43
exon number 2
gene id G739802
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 69145635 ~ 69147221 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ctctctctctctgtagctctctctctgtatctctctctctctctgtagctctctctctgtagctctctctctctgtaacttcctctctctctctcttaactctctctctctctctgtaactatctctctctctgaaactctctctctcggtaactctctctctctctctgtaactctctctctctatctctctctctctgtaactctctctctatatatctctgtaactctctctatctctctgtaactctctctctgtaactttcTCCCTGTAACTTTCTCCCTAACTTTCTCTCtgtaactatctctctc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU839967 lncRNA upstream 26514 69117563 ~ 69119121 (+) True G739748
TU839960 lncRNA upstream 99763 69045602 ~ 69045872 (+) True G739746
TU839924 lncRNA upstream 141505 69003517 ~ 69004130 (+) True G739710
TU839950 lncRNA upstream 145009 69000171 ~ 69000626 (+) True G739736
TU839949 lncRNA upstream 146247 68999172 ~ 68999388 (+) True G739735
TU840044 lncRNA downstream 34292 69181513 ~ 69192634 (+) True G739821
TU840042 lncRNA downstream 34895 69182116 ~ 69182446 (+) True G739819
TU840163 lncRNA downstream 227903 69375124 ~ 69375357 (+) True G739932
TU840164 lncRNA downstream 228330 69375551 ~ 69375818 (+) True G739933
TU840165 lncRNA downstream 228711 69375932 ~ 69376131 (+) True G739934
XM_036986060.1 mRNA upstream 28640 69046411 ~ 69116995 (+) False LOC110530428
XM_036986059.1 mRNA upstream 28640 69048709 ~ 69116995 (+) True LOC110530428
XM_021613485.2 mRNA upstream 100039 69019200 ~ 69045596 (+) False LOC110530427
XM_021613486.2 mRNA upstream 100039 69019209 ~ 69045596 (+) True LOC110530427
XR_002474334.2 mRNA upstream 139027 69005246 ~ 69006608 (+) True LOC110529135
XM_021613491.2 mRNA downstream 116301 69263522 ~ 69354693 (+) False LOC110530432
XM_021613492.2 mRNA downstream 116301 69263522 ~ 69354693 (+) False LOC110530432
XM_036986064.1 mRNA downstream 147617 69294838 ~ 69354693 (+) False LOC110530432
XM_021613489.2 mRNA downstream 147682 69294903 ~ 69354693 (+) False LOC110530432
XM_021613490.2 mRNA downstream 147682 69294903 ~ 69354693 (+) False LOC110530432
TU839922 other upstream 140519 69004337 ~ 69005116 (+) True G739708
TU839882 other upstream 238670 68903365 ~ 68906965 (+) True G739670
TU839857 other upstream 286882 68858383 ~ 68858753 (+) True G739648
TU838937 other upstream 1223013 67906377 ~ 67922622 (+) True LOC110530413
TU838300 other upstream 1598026 67546129 ~ 67547609 (+) True G738244
TU841127 other downstream 389179 69536400 ~ 69538276 (+) True G740827
TU842479 other downstream 1479000 70626221 ~ 70626744 (+) True G742095
TU843350 other downstream 2548381 71695602 ~ 71706542 (+) False G742860
TU843344 other downstream 2557422 71704643 ~ 71715616 (+) False G742860
TU843351 other downstream 2557422 71704643 ~ 71715616 (+) False G742860

Expression Profile