RNA id: TU840044


Basic Information

Item Value
RNA id TU840044
length 2484
lncRNA type antisense_over
GC content 0.39
exon number 3
gene id G739821
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 69181513 ~ 69192634 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCCAACTTTACACTGTACAAGATACAACGTTGTTTACAGCTGTAGTAGTCATTTATTTACAAAGTTCTGCGTGTCAAAGTGATGCGCTAAAAAGGCATTTTTCAATCACTGTAAGCATTTATAGAAGTAAGGCAAAATACTTGAAACTTGATGTATTTACATTTTTGCAGATCAAGGGAAAGTCTTCATCTCTCTAACTAATGGTCATAGTCTACAGCATGGGAGTTGGAAACACTGTGATTCTACAGCTGCCACAGATGTTGCTAAGTCTGTACGTATTTGCAGAATactgttttctctgtttgtgtgtgtgtgtacatgtgtgttgtAAGTGCAGTACAGTAACTCACCCTCTGCTCGCGCTCAGAGCACTTGTACATGAGTGTAAGGAAGTTGAGGTCAGCTGTGTCCGACTCTGTCTGCCTCGCCTCGATCAGACGACCAATGTAGCGGTTGACCCGTGTGCCCGGGCTGGCCTGGCTCACGTTAGCTGACACCGAAGTCCGGTTCCGCAGTTTATCTGGAGCCGTCCGCAGGGCCCTCCGCTGTGGCACAGCATTGTGGGAAACGGAGTCCTGACTTAACTACGTTCAGAGGGTTTGATACCAGCTGTTCAAAACAATGGAGCTTGGAGGAAAAATACTACGGGGCTTTTACTGTCTATTGTTGAGGATCACTGCGGGGTAGAGAAAGTTTATATCTAACTGCATGTAGGTAGGGTtgtgacgataccagtatcgcaatatcGCAATATTTGATTTTCCATgtcaaaaaataaaacacaaagcTGAAGGTCTTTGGACCTTAAAAACCTACTTTAAGTCAAATATTCTGTGATGTAGGTGTTTTTAAAGAAAAAAGACTCTGGAGGACAACATAATAACGTTTGTTTCAAACATTAGGGCTATTTTACTGAAGAAATGAAATCTACCTcattgttttgtttccttgccacgatacgtTTGAGTATCGCGTTACTGGTATTGTGACAACCCTATTTAGCAGGTATATCACAAACCATTCAACAACAATATTGACCATGGAGTAAGAAGAGATTTGTTCTAATTGTATTCAAAAAGGGCAATGAAACAAAGTCAATCATTGTGGTTGACTTGACTTCACATTTGTCAATAACTGACATCAACTTAATAAATGCTTAACTTCACACAACAAACAAAAATCCATTGTTCCCTCTACAGTTCAGTTaacattcattgttccctctacaGTTCAGTTaacattcattgttccctctacaGTTAACATTCATTGTTCCATCTGCAGTTCAGTTaacattcattgttccctctacagttaacattcattgttccctctacaGTTAACattcattgttccatctacagtTCAGTTaacattcattgttccctctacaTTTAACATGCATTGTTCCCTCTACAGTTCAGTTAACATTCATTgtaggtatttggacataaataatggacattttcggaacaaaacaaacatttattgtggacctggaaTGCCTGTAGTGCTTTCTGAtgtatatcatcaaaggtaagggaatatttatcatgtcattttttgtttatgttgacgccatctttgcggctgtggtgtttttacttttgagcgccgtctcagattattgcatggtgctcggcggtcatcgtcaccttcctactagccgccaccgatccctttttcgtttgtctgtttgttttgtcttattagtttcacctgtgttctGTTGTATGATTTAATGAGCTTCCCTATTTTAAGTACGtgtacccgcccttgttttgtgcaggattgtctttatgttacgtgtgtgcgttTTAGGTAGAGTTGGATATATTTTCAGAACTTGGCACCCTGTGTTTTTGGGTAGTCACTTTGTTGTCCGCGCCCTGTGTTGTTGGGCTTCTCATTTTTGTGTGCCGTATTAAAGAGCACTTTTCACAACTGgaactctctgcgcctgattccttcacccacctagtcccgcgtgacagttgaatgatgtggctatgcaaaatcacttgatgtttttggaacgagtgaatctaacgcgccaatgtaaactcagatttttcgaaataaatatgaactttatcaaacaaaacatgcatgtattgtgtaacatgaagtcctatgagtgtcatctgatgaagataattcaaggttagtgattaattttatctttatttctggtttctgtgaatgctatattttgctggaaaatggctgtgcttattgtggttatGTGGAGAccaaacataatcgtttgtagtgctttcgctgaaaagcttatttgaaatcggacactttggtgggattaacaacaagaatagctttaaaatgatatgaaacacatgtatgttttaggaattgtaattatgagatttctgtggtttgaatttggcgccctctattttcactggtagttgtcatatcgatcccggtatcaGGATTGtagccataacaggttaacaGTCATTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU840025 lncRNA upstream 34292 69145635 ~ 69147221 (+) True G739802
TU839967 lncRNA upstream 62392 69117563 ~ 69119121 (+) True G739748
TU839960 lncRNA upstream 135641 69045602 ~ 69045872 (+) True G739746
TU839924 lncRNA upstream 177383 69003517 ~ 69004130 (+) True G739710
TU839950 lncRNA upstream 180887 69000171 ~ 69000626 (+) True G739736
TU840163 lncRNA downstream 182490 69375124 ~ 69375357 (+) True G739932
TU840164 lncRNA downstream 182917 69375551 ~ 69375818 (+) True G739933
TU840165 lncRNA downstream 183298 69375932 ~ 69376131 (+) True G739934
TU840171 lncRNA downstream 199664 69392298 ~ 69392513 (+) True G739940
TU840173 lncRNA downstream 213658 69406292 ~ 69406530 (+) True G739942
XM_036986061.1 mRNA upstream 32837 69135571 ~ 69148676 (+) True LOC110530431
XM_036986060.1 mRNA upstream 64518 69046411 ~ 69116995 (+) False LOC110530428
XM_036986059.1 mRNA upstream 64518 69048709 ~ 69116995 (+) True LOC110530428
XM_021613485.2 mRNA upstream 135917 69019200 ~ 69045596 (+) False LOC110530427
XM_021613486.2 mRNA upstream 135917 69019209 ~ 69045596 (+) True LOC110530427
XM_021613491.2 mRNA downstream 70888 69263522 ~ 69354693 (+) False LOC110530432
XM_021613492.2 mRNA downstream 70888 69263522 ~ 69354693 (+) False LOC110530432
XM_036986064.1 mRNA downstream 102204 69294838 ~ 69354693 (+) False LOC110530432
XM_021613489.2 mRNA downstream 102269 69294903 ~ 69354693 (+) False LOC110530432
XM_021613490.2 mRNA downstream 102269 69294903 ~ 69354693 (+) False LOC110530432
TU839922 other upstream 176397 69004337 ~ 69005116 (+) True G739708
TU839882 other upstream 274548 68903365 ~ 68906965 (+) True G739670
TU839857 other upstream 322760 68858383 ~ 68858753 (+) True G739648
TU838937 other upstream 1258891 67906377 ~ 67922622 (+) True LOC110530413
TU838300 other upstream 1633904 67546129 ~ 67547609 (+) True G738244
TU841127 other downstream 343766 69536400 ~ 69538276 (+) True G740827
TU842479 other downstream 1433587 70626221 ~ 70626744 (+) True G742095
TU843350 other downstream 2502968 71695602 ~ 71706542 (+) False G742860
TU843344 other downstream 2512009 71704643 ~ 71715616 (+) False G742860
TU843351 other downstream 2512009 71704643 ~ 71715616 (+) False G742860

Expression Profile