RNA id: TU841456



Basic Information


Item Value
RNA id TU841456
length 434
lncRNA type inter_gene
GC content 0.59
exon number 1
gene id G741129
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 69786652 ~ 69787085 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gggcgctgtactgtagCACCAGCTGTGctatcagagtccctgggtttgcgcccaggctctgtcgtaaccggccgcgaccgggaggtccgtggggcgatgcacaattggcctagcgtcgtccgggttaaggagggattggtcggtagggatctccttgtctcattgcgcaccagcgactcctgtggcgggccgggcgcagtgcgcgctagctaaggttgccaggtgcacggtgtagcctccgacacattggtgcggctggcttccgggttggatgcgcgctgtgttaagaagcagtacggctggttgggttgtgtatcggaggacgcatgacattcagccttcgtctttcccaagcccgtacgggagttgtagcaatgagacaagatagtagctactacaacaattggataccatgaaattggggagaaaaaggg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU841453 lncRNA upstream 2292 69784076 ~ 69784360 (+) True G741126
TU841447 lncRNA upstream 10421 69775940 ~ 69776231 (+) True G741120
TU841446 lncRNA upstream 11155 69775282 ~ 69775497 (+) True G741119
TU841445 lncRNA upstream 11453 69774987 ~ 69775199 (+) True G741118
TU841436 lncRNA upstream 22223 69764083 ~ 69764429 (+) True G741109
TU841470 lncRNA downstream 24332 69811417 ~ 69811633 (+) True G741143
TU841475 lncRNA downstream 34822 69821907 ~ 69822171 (+) True G741148
TU841488 lncRNA downstream 58296 69845381 ~ 69845597 (+) True G741161
TU841489 lncRNA downstream 60088 69847173 ~ 69847434 (+) True G741162
TU841700 lncRNA downstream 213781 70000866 ~ 70001197 (+) True G741369
XM_021613507.2 mRNA upstream 59178 69725327 ~ 69727474 (+) True LOC110530442
XM_021613505.2 mRNA upstream 83334 69699633 ~ 69703318 (+) True foxf2a
XM_021613504.2 mRNA upstream 92690 69692289 ~ 69693962 (+) True LOC110530440
XM_021613503.2 mRNA upstream 195613 69578994 ~ 69591039 (+) False LOC100499175
XM_021613514.2 mRNA downstream 316080 70103165 ~ 70127450 (+) True wrnip1
XM_021613516.2 mRNA downstream 348370 70135455 ~ 70148930 (+) False dhx30
XM_036986069.1 mRNA downstream 348856 70135941 ~ 70148930 (+) True dhx30
XM_036986882.1 mRNA downstream 385346 70172431 ~ 70186472 (+) True LOC110530450
XM_021613521.2 mRNA downstream 663922 70451007 ~ 70460534 (+) True LOC110530454
TU841127 other upstream 248376 69536400 ~ 69538276 (+) True G740827
TU839922 other upstream 781536 69004337 ~ 69005116 (+) True G739708
TU839882 other upstream 879687 68903365 ~ 68906965 (+) True G739670
TU839857 other upstream 927899 68858383 ~ 68858753 (+) True G739648
TU838937 other upstream 1864030 67906377 ~ 67922622 (+) True LOC110530413
TU842479 other downstream 839136 70626221 ~ 70626744 (+) True G742095
TU843350 other downstream 1908517 71695602 ~ 71706542 (+) False G742860
TU843344 other downstream 1917558 71704643 ~ 71715616 (+) False G742860
TU843351 other downstream 1917558 71704643 ~ 71715616 (+) False G742860
TU843343 other downstream 1926643 71713728 ~ 71715616 (+) True G742860

Expression Profile