RNA id: TU841756


Basic Information

Item Value
RNA id TU841756
length 6195
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G741425
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 70055936 ~ 70062360 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACACTTCCAAATGCATATCGAATTCAAAATGCATTTCACTCTGTTGCTTGGATCAGAAAAAGGACATTGTTTTTTATAGAAAAGATTTTACAGAATCTATTCTACTCTAACCTTCAAAACAATGACGATCAATGTTCAGTGGACAAGAGAAAGCAATTTCACGGTCTATACATCTGTAAACCTGAGAAAATATATATACCATAGAGGAAATGATAAAAAGTTTAAAACATTCAATACTAACAATATTTGAATCTAATAGGTAGTATACTTTCCAATAGCCAACCTTCATGGAAGGTAATAAAGTCGTTTTTATTTGATTACAATATGATAACATGCAGACAAGCATTAACAAACAACAATATTAACAATGCAAATTATTAAGCCCAACCCTACACATTGAAATAATGATGCATCATGTGTCATATATGTACTATTTTGGTTTTACTGAGCACATGCAAGCCAAAAACATGCTTTCATCAATTAAAATTAACAACAAAGGCCAAATAAAAAATTACCTGCTTAATCTTAAACAAAGGTTTTTaaataaaacaaagaaaaaaactgATAAGACTTGGATTATTTTAATTTACagtaaaaatgtttgttttttatacACACATGAACAAGTATAATGTAGGACATGACTACAGACATAGAAACATGTCACTTCTAACAAGGTATTTTTCCTTCAATGCTATGATTAGTTTGGTGAATTCATCTgatttaaataaataacaatataaaGTGGGCATACTAGAGCTTGAAAACAGACCACACCAATTGTTTgtttatgaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaattgtgAAATCATAACGAGCTGTCTCTGGAACTTAACCCTTAGATGCAGACCCTGATTCTGGGAGGCATTTTTTTACTTTGCCAATCATCTTGTTACAAAACATTGTTCACAACCATTTCCATTTGTACAACTCTTTCCTTAGAGAAAGCACAGCTTTTCCAAAAATACAATCTAGAATATATCAACAGCAATTAAAACAACAGATCAAATTATTTTAAGAAAATGAAAACAGGATAACAATGCCTTCCCAGACTAATGCCACCGAAAAAGTGTTAAGTACTCCAGATCCGCATTAAAGGGTTTAAGCACACATCTGCATATTTTATCTATTTACGCCAAATGTCACgagaacaaaaaacaaacaacaaacataTGACATTGGTCTATCTATCAGTCAAATTAAACAGGAAAATCCCTCGGTTTGCATGAATACACTCACATTCAGAGGAAAAGTGGGGTACAGTACTCAACATGGAACCCTTTTACATTAGCAGGAAATTAAATTAAAAAGAGATCAGAGTCACATCGAAGCATATATTGTGAGGTGCATTGTGGATAACTGATGTGTGAATCAAAATTTAATTCACACATGAAGGAAGAGAGCAGTAAAACTGTGTGAGCAGGGAAACAAACACACTTCGGATAAAAGTTCAGCTAGTTTGTCTGACAAAATCCCCAAAGTATTCACAAGATCAGGGCAGTTAGGTGTTGGTGTTCTGTTATACTGTCTTGCATTGTAGATTACATTCACATATCCAGCTAAATATCTTTTACTACACCTTCCAGTCTTCAAGGGCTCTACGCTTTCACACTAAACTGTGGGAATAGTACTTTTACTTTGTAAAAGTAAGATAACATGTATTGTCCATTCATCACACAGCTCTGGTAGTTCTACAGGTGTAGTTCAATAGGTGTAGGTTTTGTGAGCATCTGAGGGGTGTAGGGGTGAGAAAAGCCGGCTTTAGGCCCCATCTGGTGGCTAAACAACCCATTACAAGGTGTGGAATCTCTCCACAGAGACTTAATTGACTGCAGCTGCACATCTTGTACAGCTGGCTGCAATTAGGGCGGCAGAACATGGGGAGGCAGTGGatttcagagagggagagagaaagccgtGAGGAGGACACACCAAAGTTTTATCGCAAATATTGGACCAGTTTGCACCCAATGCCGAAGGTTTGAAGTTCTCTCTGCCCTGGGGTAAAATATTATCTTCCCCAGTGACTTACGTTTATGTTCAGTTGCTGACATAAGGGCCAGTTGTTGATTTTGATTATTGGCCTCATTTCTTTGTGAGAACATTCTTTTGGGACATGAAGATTCCCCAAGCTACCTGTGAaccctttatttatttaataaatccTCTTTGAGTGCTGAATTGCCTTGTCTGTCTGAGTTGTTACACTGGTGTAGAATGTAAGTGTCCCCGTGTGGTAGTGAAACCTGAGACAACCATTTAGACAAGTTATGGTGCCCTGTAGGCTGTGAGGACAGGGTTTTTTAAGTCGGTTTTTACAAGAGAAAATGCTGCTGGCAGAAGAATGGATGTCAAGTCCCTCAACCATGAGGTGGTTGGCGacggaggggactaagcaccaCACATAAGGGAGCACTGAAGAGCTCTGAAGGTAGTCTTGAGTTTCTCACAGGCCATAAATAACTCTgggctcccgggtggcgcagcgttctaaggcactgcatctcaatgcaagaggcatcactagagtccctggttcgaatccaggctgtatcacatccgctcatgattgggagtcccaaagagcggtacacaattggcccagcatcgtctgggtttggccggggtaggcagtcattgtaaataagaatttgttcttaactgacttgcgtagtttaATAAAGGGGCTCCTTGTGGATCCAGAGAGAAGACCAGCAAAGAGGCCCTGAAGGAGCGTCTGGGGTGCCTGTGCGCCGTCCTACAAGAAGAGCGTCATGGCCTCAAACGGCTCCATGAGAAGTCAAGGCAGCTGGCCACCTTGCAAGAGGAGACTTTCAGCAACAGGAAGAGGGTAACCTGGCTGAAAAGTCAACTGAAAGAGAATCAAGTATGGTCCTCAGCCTGCAGGAGAAGTGCAAGGACCAAGGGGAAGAGGTGAGAATGTAAAGACTAAGTTCCAGGATGTTGTAGTGACTTTGGAAGAAGAGGCCTGTTCTGAATCGTGAACATTTATCTTAAAGAGGTAGTTCACGCTGCCAATGAGCAATCTGAAAAGCTCATGAAAAGTAATGCTCGGCTCAGAGGAAAAGCTCAGGTGAGAAGAATTAGAGGCAGGAAAGCTGCAGCTGAAGAGGGTCCTGGAGGTCTCTGAGGTAGCTCACGAGTGTGCAGAAAAGGAGCATAGGGAGCAGGTAGCCAGCACCCAGAATTTAGAGATCTGCCGGCAGAGGGCAGAGCTACAAGGGGAAGCCCAGGCTGGGATGTTGGCCCTGTTGGAAGAAAAGCTGCACCCCAGTTCAAAACGAACAGGGGTTTCCACAAAGGTGCTGGACAAGCAGTAAGAGCAAGCAGACCGAGCAGGAACTGCCCAGGTAATTGAGAAGCAATGAAGAGGAACAATGTGCAGGCCTGTCTGGAAGAGGAGCAGGCAGCAAGAAGGCTTGAGCAGGAGGCAGTGAAGAGCCTCATAAGTGAATTGAAAAGGAATGAAGAGATGGCAAAGAAGTCAGCAATGGAAGCCAAGCAGAGAGTGGTGGAATTGATGGAGGAGAAGATGTCCCTGACAGGAAAAGCCTCTGAATTGCAATCATAAGTGGAAAACGTAATGAGGTTCAGTAAATGCAGGATGTCGTTCACAGGCTGGAGACATATAATATGGCCTCGAGGGCCAAGTGGGAGCAGATCTTCTTGTTGCTCAAAAATGAGCAGGAGAGGCTAAGTAGCCTTGAGGTGCAACTGCGTGAAAAGCATCAACACAGCCATCTGCTGAGGCAAGTCCTGGACTTAGAGGGGAGACGGAGCTCTGGTGGGATCAAATCCCACTCTCCATTTCAGGGGACATGTTTGCTCCTTCGTGTGAGTTGTTTACCCACACCACTGAACAGCCCCCTGACCGAAGAGAAAACAGCCTGTATGTCCAGAACCCATGGCCAGAGAAGATTAAAGGAATCGCGAAAAAGAAAACCTGGACCAGAGCATGGTTACACAGAGGGTTCCCAGGACAACCACACCAACAAGAATGTCAGTCCAAATACATTCCACTGATGACTCTCCCACTTTGTTTTCCCCAGAAGAGGTTTCAAGGTCCCCTGATGGTGAAGTGGTGACAGGGAGATGGCGGTCCAAAGGATTCAGCAGCGACCAGGGAAGTTCCAGTGCTCCAAAATCAAAAACTGGTTAGGAAACTGGGGTGAGCCCGTAGAAGGGCACTACCAGCCAAGAGGGAAGCAGCCCAATACTCTGGTGAGTGAAGTTTCGTCATGAGTTAAGAGGTCTGAAGGAAGGTTGAATTGTGATTCAGAAGTGAAGAGGTTTAAAGTCTGAAGTGTCTAACCATGGTTGACGTGAGTCTTCTTTCCAAAACCCAGAAGACAGAACTGCCAGCAGGTGGATCACTTGCACAGAAGGCAGTGAGACAAAGAACCCAACAGGGCGGTTGAGGCAACTGGCTCACCCTCAGGTCAAACCTCTGACACGACGCAGAGGAAAAATTCACAGCCAGAGAAGAAGAATCCCCTTTAAAGACAGGAAGAGGCCAAGGAGGCAGTGGAGCTCTGCCAGTCATCCACCCAGTCAAATGTGAATGGAAGAGCTACAAGACATGGGTGAGCCTGACAAACCAACTATGTTACTGAGCCTCCCcaggagtggtggagtgttggagaGTGGGCCTGGGAGTCAGAGGGCCTACTATGGTCAGGCAAGTTCATTAAGATGGATGATGGTTATATGGTAACCCAAGACTTTGCCAAGCTCTTGGTTACCAGGAGGCCTCAGGGAGAGTCTCCCAACTCCACAGAAACTGGTCAACTACCATCAGGTACACCACCAGGGGACAGCGAGCCCCACCTTTACCATGAGGTAAAGGTCCAAGATGGCACTGTGGTGGTGAGTATGACCAATGAAAAGGGATGTTCAGAAATGGAGAAACCTCAAACTCCTGGCATGGACCTTCAAATGTTCTTTGACCAGAGCTGAGGCAGGTGGCATGCTGTCGGGGTGCTCTATTTTGAAAATGTTGAAGAAGCATGGTTTTCCAAGAAGGGCTGGAGGAGACCAAAAGAAATGCCCTGTGAAAGAAAAGGGGCTTGAAGTAAaactgaggtaaaaaaaaaacatttctgaacATTTCTGTGATAATAACCCAAGACTTTGCAGAAACCCTGAGGCCCAAGTGGAAAAAGGCGAGCCGCTGTCATTCAAAGGAGAACGGGAAAGCTGGTGAGGAGGCACAGACGCATGGAGGTGAGAGCCTTCCCCCTCTCAATAACCAGTTATCGTGTGTGCCCCAGAAGGTGGCCGAGAACCAAACCCATGAAGAGGGTGAACCATGGAGATGATGAACATCAACCTTTGTTGTATGACCCCTAGAGGTCCAGGGGTGTACCTCCATGGCCTTGGATTAGATGCCTGGTCAAGAGTTGACTTTATCGGGGCATTGGCCTGTACAAACCACGAGTTGAAGCAGGGATGGGTGGTGTGTGAGCATCCGAGGGGTGTAAGGGTGGGAAAGGCCGGATTTTGGCCCCACTTGGTGGATAAACAACTCATTACAAGGTGTGGCATCTCTCCACAGAGACTTAATTGACTGCAGCTGCACATCTTGAACAGCTGGCTGCAATTAGGGTGGCAGAACATGGGGAGGCAGTGGcgttcagagagggagagagagagcagtgaggagGACACGCCTAACCATTGGACCAGTCAGCACCCAATGACGACGGTTTGAAGCTCTCTCTGCCCTGGGAGAAAATAAATCACTGGGAAAGAATACGATTACATTCAGTTATTGCCATAAAGGACCAGCTGTTGATTTTGATTATTGgccttatttttttttatctgttaaTAAATCCTATTTGAGTGCTGAATTGCCTTGTCTGTCTCTTGGTTTTGCACTACCACACATGACACACTGCTCCACCTACGGAGTTTTAACAGTTTAAATGTGTTCATACAGGTAAGCTCTGGTAGTTCTACAGGTGTACAGCAGGCTTGGTCCAAGTGGCCACCGCTGGCTCCGTCAAGTCATCATGCTGCTCAAAACATAAAGGGATAGAAAACAGTTCAGTTTCAGCAATGTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU841748 lncRNA upstream 7568 70048141 ~ 70048368 (+) True G741417
TU841700 lncRNA upstream 54739 70000866 ~ 70001197 (+) True G741369
TU841489 lncRNA upstream 208502 69847173 ~ 69847434 (+) True G741162
TU841488 lncRNA upstream 210339 69845381 ~ 69845597 (+) True G741161
TU841475 lncRNA upstream 233765 69821907 ~ 69822171 (+) True G741148
TU841789 lncRNA downstream 43793 70106153 ~ 70107065 (+) True G741455
TU841831 lncRNA downstream 105103 70167463 ~ 70168134 (+) True G741494
TU841836 lncRNA downstream 110925 70173285 ~ 70173781 (+) True G741499
TU841887 lncRNA downstream 209388 70271748 ~ 70275710 (+) True G741547
TU842007 lncRNA downstream 372805 70435165 ~ 70435374 (+) True G741665
XM_021613507.2 mRNA upstream 328462 69725327 ~ 69727474 (+) True LOC110530442
XM_021613505.2 mRNA upstream 352618 69699633 ~ 69703318 (+) True foxf2a
XM_021613504.2 mRNA upstream 361974 69692289 ~ 69693962 (+) True LOC110530440
XM_021613503.2 mRNA upstream 464897 69578994 ~ 69591039 (+) False LOC100499175
XM_021613514.2 mRNA downstream 40805 70103165 ~ 70127450 (+) True wrnip1
XM_021613516.2 mRNA downstream 73095 70135455 ~ 70148930 (+) False dhx30
XM_036986069.1 mRNA downstream 73581 70135941 ~ 70148930 (+) True dhx30
XM_036986882.1 mRNA downstream 110071 70172431 ~ 70186472 (+) True LOC110530450
XM_021613521.2 mRNA downstream 388647 70451007 ~ 70460534 (+) True LOC110530454
TU841127 other upstream 517660 69536400 ~ 69538276 (+) True G740827
TU839922 other upstream 1050820 69004337 ~ 69005116 (+) True G739708
TU839882 other upstream 1148971 68903365 ~ 68906965 (+) True G739670
TU839857 other upstream 1197183 68858383 ~ 68858753 (+) True G739648
TU838937 other upstream 2133314 67906377 ~ 67922622 (+) True LOC110530413
TU842479 other downstream 563861 70626221 ~ 70626744 (+) True G742095
TU843350 other downstream 1633242 71695602 ~ 71706542 (+) False G742860
TU843344 other downstream 1642283 71704643 ~ 71715616 (+) False G742860
TU843351 other downstream 1642283 71704643 ~ 71715616 (+) False G742860
TU843343 other downstream 1651368 71713728 ~ 71715616 (+) True G742860

Expression Profile