RNA id: TU841836



Basic Information


Item Value
RNA id TU841836
length 497
lncRNA type intronic
GC content 0.44
exon number 1
gene id G741499
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 70173285 ~ 70173781 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTTGCTCAGCCTATCGCAGGCGCTCAGGCTggtccccgcctcttggcgcttcttGGAGTCCACCCTCTGTCGATGTATAGATTCTTACTGTTCTGGTATCACACCCTAGTTATAACAGTTGCTCAGTTCctgctattgtgttgttcagtatttttccatctcagttaAACCTCGTGATGACCACCCCTCCCTATACCTGATTAACCACAACTTTGTAACATGCAGCAAGTCACACCATGTGCTCAatattgtcacacacacacacacacacacacacgtaacagaTGTATATGTACTCTCCATGCGTTGTGTTTTCTCAAAATAAATCACTTCGgccagtggtcccagttgagcatttatttctgttgttaaatgggaaacagcacgttagttgtgcaGGGCTGAACGGTATTGATGGCTGTCGATGGCAAAATCccttgcatcacattttcatactgggcgaacaaaatacaaaaatacaatacaaaatataacat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU841831 lncRNA upstream 5151 70167463 ~ 70168134 (+) True G741494
TU841789 lncRNA upstream 66220 70106153 ~ 70107065 (+) True G741455
TU841756 lncRNA upstream 110925 70055936 ~ 70062360 (+) True G741425
TU841748 lncRNA upstream 124917 70048141 ~ 70048368 (+) True G741417
TU841700 lncRNA upstream 172088 70000866 ~ 70001197 (+) True G741369
TU841887 lncRNA downstream 97967 70271748 ~ 70275710 (+) True G741547
TU842007 lncRNA downstream 261384 70435165 ~ 70435374 (+) True G741665
TU841996 lncRNA downstream 267690 70441471 ~ 70463579 (+) True G741654
TU841995 lncRNA downstream 334069 70507850 ~ 70515932 (+) True G741653
TU842050 lncRNA downstream 354877 70528658 ~ 70532557 (+) True G741704
XM_021613516.2 mRNA upstream 24355 70135455 ~ 70148930 (+) False dhx30
XM_036986069.1 mRNA upstream 24355 70135941 ~ 70148930 (+) True dhx30
XM_021613514.2 mRNA upstream 45835 70103165 ~ 70127450 (+) True wrnip1
XM_021613507.2 mRNA upstream 445811 69725327 ~ 69727474 (+) True LOC110530442
XM_021613505.2 mRNA upstream 469967 69699633 ~ 69703318 (+) True foxf2a
XM_021613521.2 mRNA downstream 277226 70451007 ~ 70460534 (+) True LOC110530454
XM_021613522.2 mRNA downstream 290067 70463848 ~ 70493098 (+) True LOC110530455
XM_021613534.2 mRNA downstream 342707 70516488 ~ 70525948 (+) True rpe65a
XM_036986090.1 mRNA downstream 531293 70705074 ~ 70743483 (+) False LOC110530463
XM_036986088.1 mRNA downstream 533141 70706922 ~ 70743483 (+) False LOC110530463
TU841127 other upstream 635009 69536400 ~ 69538276 (+) True G740827
TU839922 other upstream 1168169 69004337 ~ 69005116 (+) True G739708
TU839882 other upstream 1266320 68903365 ~ 68906965 (+) True G739670
TU839857 other upstream 1314532 68858383 ~ 68858753 (+) True G739648
TU838937 other upstream 2250663 67906377 ~ 67922622 (+) True LOC110530413
TU842479 other downstream 452440 70626221 ~ 70626744 (+) True G742095
TU843350 other downstream 1521821 71695602 ~ 71706542 (+) False G742860
TU843344 other downstream 1530862 71704643 ~ 71715616 (+) False G742860
TU843351 other downstream 1530862 71704643 ~ 71715616 (+) False G742860
TU843343 other downstream 1539947 71713728 ~ 71715616 (+) True G742860

Expression Profile