RNA id: TU842478


Basic Information

Item Value
RNA id TU842478
length 276
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G742094
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 70625147 ~ 70625422 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgtatatactgtactctatatcatctactgcatctttatgtaatacatgtatcactagccactttaaactatgccactttgtttacacactcatctcatatgtatatactgtactcgataccatctactgcatcttgcctatgccgctctgtaccatcactcattcatatatctttatgtacatattctttatccccttacacttgtgtctataaggtagtagttttggaattgttagctacattactcgttggttattactgcattgtcggaact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU842471 lncRNA upstream 5797 70619114 ~ 70619350 (+) True G742087
TU842100 lncRNA upstream 18415 70604476 ~ 70606732 (+) True G741748
TU842050 lncRNA upstream 92590 70528658 ~ 70532557 (+) True G741704
TU841995 lncRNA upstream 109215 70507850 ~ 70515932 (+) True G741653
TU841996 lncRNA upstream 161568 70441471 ~ 70463579 (+) True G741654
TU842492 lncRNA downstream 13840 70639262 ~ 70640529 (+) True G742108
TU842499 lncRNA downstream 24914 70650336 ~ 70651128 (+) True G742115
TU842500 lncRNA downstream 26718 70652140 ~ 70652591 (+) True G742116
TU842504 lncRNA downstream 32827 70658249 ~ 70658452 (+) True G742120
TU842514 lncRNA downstream 50165 70675587 ~ 70676674 (+) True G742130
XM_021613534.2 mRNA upstream 99199 70516488 ~ 70525948 (+) True rpe65a
XM_021613522.2 mRNA upstream 132049 70463848 ~ 70493098 (+) True LOC110530455
XM_021613521.2 mRNA upstream 164613 70451007 ~ 70460534 (+) True LOC110530454
XM_036986882.1 mRNA upstream 438675 70172431 ~ 70186472 (+) True LOC110530450
XM_036986069.1 mRNA upstream 476217 70135941 ~ 70148930 (+) True dhx30
XM_036986090.1 mRNA downstream 79652 70705074 ~ 70743483 (+) False LOC110530463
XM_036986088.1 mRNA downstream 81500 70706922 ~ 70743483 (+) False LOC110530463
XM_036986091.1 mRNA downstream 81500 70706922 ~ 70743483 (+) False LOC110530463
XM_036986094.1 mRNA downstream 81501 70706923 ~ 70732633 (+) False LOC110530463
XM_036986092.1 mRNA downstream 81501 70706923 ~ 70743483 (+) False LOC110530463
TU841127 other upstream 1086871 69536400 ~ 69538276 (+) True G740827
TU839922 other upstream 1620031 69004337 ~ 69005116 (+) True G739708
TU839882 other upstream 1718182 68903365 ~ 68906965 (+) True G739670
TU839857 other upstream 1766394 68858383 ~ 68858753 (+) True G739648
TU838937 other upstream 2702525 67906377 ~ 67922622 (+) True LOC110530413
TU842479 other downstream 799 70626221 ~ 70626744 (+) True G742095
TU843350 other downstream 1070180 71695602 ~ 71706542 (+) False G742860
TU843344 other downstream 1079221 71704643 ~ 71715616 (+) False G742860
TU843351 other downstream 1079221 71704643 ~ 71715616 (+) False G742860
TU843343 other downstream 1088306 71713728 ~ 71715616 (+) True G742860

Expression Profile