RNA id: TU842514


Basic Information

Item Value
RNA id TU842514
length 1088
lncRNA type antisense_over
GC content 0.42
exon number 1
gene id G742130
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 70675587 ~ 70676674 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAATAAATATTAATGTGCCACATCATTATTGGGCCTATGAAGCAATGCTTAATGTTTGATGAATGCTTGATGAAATAATAAACATTTGTTTTCTCTTCCAAATAAATACTACGTGTGATTCAGGTGAGATGTGGCAAATTGAAAGCAGCGTTACCTGGGGGTTCTTCCGTTAGAAAGCCAGTTGGCTACTGCACCCCGCTACACAACATCCTTTTGTAATGTGCACACTATTTACCCCTGGAATGCTCCAGGCTAATGTCTCAATAATGTTCACTCCTTTCTCAGGTCCTTCCCACAAAGGACTTAACTAATGATCCATGGACAAAATGAAGCATTTAAATTTATTCATTAATCATTCATCTCCAGCTCATTGAAAATGCTAAACTTCCACAAAATTAAGATTGAATATTGAAAAGTGATTGAGGGAGACAGCTTtctagaagagggagagagaaaatgagagagggataaaaaaaaaatgaaacaacaacaacaacaagtgtgCTTGTCTCCTGAGAGGAAGTGTTTTGCTCGGACATTGGTCCGGGTGGTCGAGGTAGTGTACTAAGTGGTAGTTAAGGTCACGGTGGGTTTTAGTAGTCCTGATTAGATCTCCAAATCTGGAGAAGCTTAGAATTTCTGTCAACACTGCCTGTAATTATTCTCTTTTCCAATTAATGGTGACATAGATTAATTATCTGATGAGGCAAAGCCAATTGCAATCATTCACCCTGCTAAAATTAGATCAGTCCTGGCAGCAGCATGAAAGTCACCTGTTTCATTGTTATGGATCTGctgctggtgagagagagagagagagagcgagagagagagagaggggggggggggatagtgaGTGAGTGAAGCGTGCTGGGGTAAGTAAGTTGTCTGGCACCAGGTGAATGTCCAATTACACTGTTATCTGAACTGTAGGCATCTTCTTCTTGTTCAACCCAATGGCATCCAGACCCACTTGTTTGTTCCCTGCTGCTGTCTCCATCGTCGGAGCATCCTCACTGGTTGTTGAGTCATCTGCCAGAGAGTGCAGAAAGGCAGAAATGCGCCGGATTGCTTCTGACAACTCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU842504 lncRNA upstream 17135 70658249 ~ 70658452 (+) True G742120
TU842500 lncRNA upstream 22996 70652140 ~ 70652591 (+) True G742116
TU842499 lncRNA upstream 24459 70650336 ~ 70651128 (+) True G742115
TU842492 lncRNA upstream 35058 70639262 ~ 70640529 (+) True G742108
TU842478 lncRNA upstream 50165 70625147 ~ 70625422 (+) True G742094
TU842515 lncRNA downstream 2020 70678694 ~ 70678897 (+) True G742131
TU842544 lncRNA downstream 48445 70725119 ~ 70774362 (+) False G742154
TU842546 lncRNA downstream 48445 70725119 ~ 70774362 (+) False G742154
TU842547 lncRNA downstream 48445 70725119 ~ 70774362 (+) False G742154
TU842543 lncRNA downstream 60542 70737216 ~ 70774362 (+) False G742154
XM_021613534.2 mRNA upstream 149639 70516488 ~ 70525948 (+) True rpe65a
XM_021613522.2 mRNA upstream 182489 70463848 ~ 70493098 (+) True LOC110530455
XM_021613521.2 mRNA upstream 215053 70451007 ~ 70460534 (+) True LOC110530454
XM_036986882.1 mRNA upstream 489115 70172431 ~ 70186472 (+) True LOC110530450
XM_036986069.1 mRNA upstream 526657 70135941 ~ 70148930 (+) True dhx30
XM_036986090.1 mRNA downstream 28400 70705074 ~ 70743483 (+) False LOC110530463
XM_036986088.1 mRNA downstream 30248 70706922 ~ 70743483 (+) False LOC110530463
XM_036986091.1 mRNA downstream 30248 70706922 ~ 70743483 (+) False LOC110530463
XM_036986094.1 mRNA downstream 30249 70706923 ~ 70732633 (+) False LOC110530463
XM_036986092.1 mRNA downstream 30249 70706923 ~ 70743483 (+) False LOC110530463
TU842479 other upstream 48843 70626221 ~ 70626744 (+) True G742095
TU841127 other upstream 1137311 69536400 ~ 69538276 (+) True G740827
TU839922 other upstream 1670471 69004337 ~ 69005116 (+) True G739708
TU839882 other upstream 1768622 68903365 ~ 68906965 (+) True G739670
TU839857 other upstream 1816834 68858383 ~ 68858753 (+) True G739648
TU843350 other downstream 1018928 71695602 ~ 71706542 (+) False G742860
TU843344 other downstream 1027969 71704643 ~ 71715616 (+) False G742860
TU843351 other downstream 1027969 71704643 ~ 71715616 (+) False G742860
TU843343 other downstream 1037054 71713728 ~ 71715616 (+) True G742860
TU844903 other downstream 1866052 72542726 ~ 72555556 (+) False LOC110530976

Expression Profile