RNA id: TU842647


Basic Information

Item Value
RNA id TU842647
length 225
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G742243
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 70893740 ~ 70893964 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgaaaggcagaacacaggatccgcgtcgcgaaaaacatattattggtcgtactgatggtgagttgacgctgatcttatattcagtagttcttctcgactgtatgtaatgaaacctaagatgacctggtgtactaatgtaagaaataacacgtaaaaaaacaaaacactgcatagtttcctaggaacgcgaagcgaggcggccatctctgtcggcgccggaagtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU842645 lncRNA upstream 2879 70890378 ~ 70890861 (+) True G742241
TU842632 lncRNA upstream 16959 70876503 ~ 70876781 (+) True G742228
TU842628 lncRNA upstream 20661 70872853 ~ 70873079 (+) True G742224
TU842626 lncRNA upstream 22966 70870569 ~ 70870774 (+) True G742222
TU842624 lncRNA upstream 23927 70869569 ~ 70869813 (+) True G742220
TU842854 lncRNA downstream 20926 70914890 ~ 70972639 (+) True G742435
TU842861 lncRNA downstream 29613 70923577 ~ 70927862 (+) True G742442
TU842881 lncRNA downstream 84391 70978355 ~ 71061889 (+) True G742451
TU842886 lncRNA downstream 97052 70991016 ~ 70992013 (+) True G742455
TU842911 lncRNA downstream 102153 70996117 ~ 70996825 (+) True G742473
XM_036986098.1 mRNA upstream 48842 70842926 ~ 70844898 (+) True LOC110530467
XM_021613547.2 mRNA upstream 48843 70841507 ~ 70844897 (+) False LOC110530467
XM_021613548.2 mRNA upstream 48843 70841507 ~ 70844897 (+) False LOC110530467
XM_021613545.2 mRNA upstream 52390 70830790 ~ 70841350 (+) False LOC110530465
XM_036986100.1 mRNA downstream 42440 70936404 ~ 70975314 (+) False LOC110530469
XM_036986101.1 mRNA downstream 42442 70936406 ~ 70975314 (+) False LOC110530469
XM_036986099.1 mRNA downstream 42443 70936407 ~ 70975314 (+) True LOC110530469
XM_036986120.1 mRNA downstream 241418 71135382 ~ 71412296 (+) False LOC110530474
XM_036986119.1 mRNA downstream 367203 71261167 ~ 71388423 (+) False LOC110530474
TU842479 other upstream 266996 70626221 ~ 70626744 (+) True G742095
TU841127 other upstream 1355464 69536400 ~ 69538276 (+) True G740827
TU839922 other upstream 1888624 69004337 ~ 69005116 (+) True G739708
TU839882 other upstream 1986775 68903365 ~ 68906965 (+) True G739670
TU839857 other upstream 2034987 68858383 ~ 68858753 (+) True G739648
TU843350 other downstream 801638 71695602 ~ 71706542 (+) False G742860
TU843344 other downstream 810679 71704643 ~ 71715616 (+) False G742860
TU843351 other downstream 810679 71704643 ~ 71715616 (+) False G742860
TU843343 other downstream 819764 71713728 ~ 71715616 (+) True G742860
TU844903 other downstream 1648762 72542726 ~ 72555556 (+) False LOC110530976

Expression Profile