RNA id: TU842911


Basic Information

Item Value
RNA id TU842911
length 503
lncRNA type antisense_over
GC content 0.53
exon number 2
gene id G742473
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 70996117 ~ 70996825 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGTAGTAGTCCCCACGGTCTATGGCCCTGAAGGCCTGCTCCACGCGACCTGTACGGATGTACTGCGCCTCCTTCAGGTTGTCAATCAGATCATTGTTGTCCTCCCCGGCGCTCACTGCACCCCCCATGGCAAGAAAGAAACGGTAGAGCAAAAAGAGGGTGCAAAACTCTTCTTTCCACAAGTGGAACACTGTTGTCTTCTTAGCGGGGCATGGAGCGATGAAGAGGACAGTGGAACACTGTGTTGTCTTCTTAGCGGGGCATGGAGCGATGAAGAGGACAGTGGAACACTGTGTTGTCTTCTTAGCGGGGCATAGAGCGATGAAGAGGACAGTGGAACACTGTGTTGTCTTCTTAGCGGGGCATGGAGCGATGAAGAGGACAGTGGAACACTGTGTTGTCTTCTTAGCGGGGCATGGAGCGATGAAGAGGACAGTGGGACACCTGAGGGACTTGTGTTCTTCTTTCCTGAGGGCCACTTCACACCATTGTCATATCAAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU842886 lncRNA upstream 4104 70991016 ~ 70992013 (+) True G742455
TU842854 lncRNA upstream 23478 70914890 ~ 70972639 (+) True G742435
TU842861 lncRNA upstream 68255 70923577 ~ 70927862 (+) True G742442
TU842647 lncRNA upstream 102153 70893740 ~ 70893964 (+) True G742243
TU842645 lncRNA upstream 105256 70890378 ~ 70890861 (+) True G742241
TU842915 lncRNA downstream 15035 71011860 ~ 71012275 (+) True G742477
TU843008 lncRNA downstream 129273 71126098 ~ 71126300 (+) True G742567
TU843064 lncRNA downstream 191721 71188546 ~ 71204806 (+) True G742611
TU843062 lncRNA downstream 192461 71189286 ~ 71194646 (+) True G742610
TU843273 lncRNA downstream 560354 71557179 ~ 71562042 (+) True G742802
XM_036986100.1 mRNA upstream 20803 70936404 ~ 70975314 (+) False LOC110530469
XM_036986101.1 mRNA upstream 20803 70936406 ~ 70975314 (+) False LOC110530469
XM_036986099.1 mRNA upstream 20803 70936407 ~ 70975314 (+) True LOC110530469
XM_036986098.1 mRNA upstream 151219 70842926 ~ 70844898 (+) True LOC110530467
XM_021613548.2 mRNA upstream 151220 70841507 ~ 70844897 (+) False LOC110530467
XM_036986120.1 mRNA downstream 138557 71135382 ~ 71412296 (+) False LOC110530474
XM_036986119.1 mRNA downstream 264342 71261167 ~ 71388423 (+) False LOC110530474
XM_036986118.1 mRNA downstream 264346 71261171 ~ 71390395 (+) False LOC110530474
XM_036986117.1 mRNA downstream 264352 71261177 ~ 71412296 (+) True LOC110530474
XM_021613580.2 mRNA downstream 484139 71480964 ~ 71636112 (+) False asic1c
TU842479 other upstream 369373 70626221 ~ 70626744 (+) True G742095
TU841127 other upstream 1457841 69536400 ~ 69538276 (+) True G740827
TU839922 other upstream 1991001 69004337 ~ 69005116 (+) True G739708
TU839882 other upstream 2089152 68903365 ~ 68906965 (+) True G739670
TU839857 other upstream 2137364 68858383 ~ 68858753 (+) True G739648
TU843350 other downstream 698777 71695602 ~ 71706542 (+) False G742860
TU843344 other downstream 707818 71704643 ~ 71715616 (+) False G742860
TU843351 other downstream 707818 71704643 ~ 71715616 (+) False G742860
TU843343 other downstream 716903 71713728 ~ 71715616 (+) True G742860
TU844903 other downstream 1545901 72542726 ~ 72555556 (+) False LOC110530976

Expression Profile