RNA id: TU843350


Basic Information

Item Value
RNA id TU843350
length 1218
RNA type TUCP
GC content 0.43
exon number 5
gene id G742860
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 71695602 ~ 71715616 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgcTTTATTATGtcaatgaaatatatatattttttacgttgttggcaaactgatatgtgacacgtattaatgccaaaataacatgcaaaacaggcaaatgTCTggctaaaaatgtggggctctgcccccacctgccctgaatgacaggtcacTGCTCTTAACtcaatctgtgtccaggaaaccattCCGACATGTTTCAGCAAAGCCTAAACTGTCGGCCTAACAGAACAACAGAGAAatgatatttttttaaagaacaatAAACACAAAAACGAAAAACGTAGAGCTCTCAAAAACTTCCTAAACTGCCATGAAATTACATATTTTACACACAGTGTCTTTTGAAAACTTATTTTGCAGTTTATTAGTGCAGTAAACATGAACTGGAAATAATTTTCGGTAGTTAAAATTCAAAGATTGGCATGTAAGAATAGGTACATTATTACAAACAATGATagctacaaaatacaaaacaattcatAATGTAGACAAAAGAGTTACCAGAAgcatttttttaaagaagctcAAGGTTTCATGTTCACCCATTAACAACAACTTTGAGTGCTTTTGAAGTTTATTTTATTGGGGTTATCCAAAGGGTGTGTTGTGCTGTTCGATGCAGGGAGAGTTCCAACATGGTTTACTCCGCTAGCTCCAGCAATGCCGGAGCCAAACCCAGGACGAGAGCCACTCCCAGGACGACCTCTCCAACCCCCCTTGGAATCTTTTCTACCCATCTTAGGGCCTCCGCTGTCCTTGCCTCTTCTTGTCCGAATCTTCTGAACTTCTGCCTCCATGTATTCACAAGAAATGTCAGACCGGTCAGTGTTGAGGGTGTTGCCAATCTCCAGAATCGGATGTCTGACCTCCATGCTGCACATCATTCGTTTCCCATTTTTCTTCAGAGGGCATGGTTGGCCTCGCTGCCCCTGTGCCTTACTGCAGAGCGTCTCCTGCAGGGGGAAGCTCAACCTTACAGACACCTCAGACTGGTCCACATCCTCTGTATTCAAAGTCTCGACTTCCAGCTGGTTCAGAAGCGGATGGAAAGCCTGCTCTTCCATAGGAAGCAGCTGATTTGAAGCAGCTGTGATGATGTCTTCATACCTGGTCTCAGTCTGGGTCTGACCTCTGACCAGCAGGTTAGCCACAGCGAGCAAGAGGAGAGATCTCACCAGAGCCTTCATCTTCATGTCTGATTCCTACTCTGAGCACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU843296 lncRNA upstream 13185 71680489 ~ 71682417 (+) False atg9b
TU843295 lncRNA upstream 13306 71679026 ~ 71682296 (+) False atg9b
TU843297 lncRNA upstream 13306 71680489 ~ 71682296 (+) True atg9b
TU843330 lncRNA upstream 42168 71653206 ~ 71653434 (+) True G742854
TU843329 lncRNA upstream 42767 71652483 ~ 71652835 (+) True G742853
TU843014 lncRNA downstream 127085 71833627 ~ 71837764 (+) True G742573
TU843397 lncRNA downstream 137249 71843791 ~ 71844084 (+) True G742904
TU843460 lncRNA downstream 225985 71932527 ~ 71934937 (+) True wnt9a
TU844189 lncRNA downstream 230889 71937431 ~ 71937872 (+) True G743613
TU844206 lncRNA downstream 241149 71947691 ~ 71947980 (+) True G743630
XM_021613582.2 mRNA upstream 13304 71659108 ~ 71682298 (+) False atg9b
XM_036986126.1 mRNA upstream 13304 71660063 ~ 71682298 (+) False atg9b
XM_021613578.2 mRNA upstream 55347 71608199 ~ 71640255 (+) False asic1c
XM_021613580.2 mRNA upstream 59490 71480964 ~ 71636112 (+) False asic1c
XM_036986124.1 mRNA upstream 59490 71583166 ~ 71636112 (+) False asic1c
XR_005052942.1 mRNA downstream 21246 71727788 ~ 71805597 (+) False LOC110530483
XM_036986127.1 mRNA downstream 21246 71727788 ~ 71818121 (+) False LOC110530483
XM_036986128.1 mRNA downstream 21246 71727788 ~ 71818121 (+) False LOC110530483
XM_036986129.1 mRNA downstream 21246 71727788 ~ 71818121 (+) False LOC110530483
XM_036986130.1 mRNA downstream 21246 71727788 ~ 71818121 (+) False LOC110530483
TU842479 other upstream 1068858 70626221 ~ 70626744 (+) True G742095
TU841127 other upstream 2157326 69536400 ~ 69538276 (+) True G740827
TU839922 other upstream 2690486 69004337 ~ 69005116 (+) True G739708
TU839882 other upstream 2788637 68903365 ~ 68906965 (+) True G739670
TU839857 other upstream 2836849 68858383 ~ 68858753 (+) True G739648
TU843343 other downstream 7186 71713728 ~ 71715616 (+) True G742860
TU844903 other downstream 836184 72542726 ~ 72555556 (+) False LOC110530976
TU844905 other downstream 836184 72542726 ~ 72555556 (+) False LOC110530976
TU844912 other downstream 836184 72542726 ~ 72555556 (+) False LOC110530976
TU844909 other downstream 844834 72551376 ~ 72555556 (+) True LOC110530976

Expression Profile