RNA id: TU843343


Basic Information

Item Value
RNA id TU843343
length 1246
RNA type TUCP
GC content 0.43
exon number 4
gene id G742860
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 71695602 ~ 71715616 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catgtttgtatgctgcTTTATTATGtcaatgaaatatatatattttttacattgttggcaaactgatatgtgacacgtattaatgccaaaataacatgcaaaacaggcaaatgTCTggctaaaaatgtggggctctgcccccacctgccctgaatgatagGTCACTGCTCTTAACtcaatctgtgtccaggaaaccatcCCGACATGTTTCAGCAAAGTCTAAACTGTCGGCCTAACAGAACAACAGAGAAATTATCTTTTTTTAAAGAACAATAAACACAAAAACGAAAAACGTAGAGCTCTCAAAAACTTCCTAAACTGCCATGAAATTACATATTTTACACACAGTGTCTTTTGAAAACTTATTTTGCAGTTTATTAGTGCAGTAAACATGAACTGGAAATAATTTTCGGTAGTTAAAATTCAAAGATTGGCATGTAAGAATAGGTACATTATTACAAACAATGATagctacaaaatacaaaacaattcatAATGTAGACAAAAGAGTTACCAGAAgcatttttttaaagaagctcAAGGTTTCATGTTCACCCATTAACCACAACTTTTGAGTGCTTTTGAAGTTTCTTTGATTGGGGAGATATCTTGCAGTTATCCAAAGGGTGTGTTGTGCTGTTCTATGCAGTGAGAGTTTCAACATGGTTTACTCCGCTAGCTCCAGCAATGCCGGAGCCAAACCCAGGACGAGAGCCACTCCCAGGACGACCTCTCCAACCCCCCTTGGAATCTTTTCTACCCATCTTAGGGCCTCCGCTGTCCTTGCCTCTTCTTGTCCGAATCTTCTGAACTTCTGCCTCCATGTATTCACAAGAAATGTCAGACCGGTCAGTGTTGAGGGTGTTGCCAATCTCCAGAATCGGATGTCTGACCTCCATGCTGCACATCATTCGTTTCCCATTTTTCTTCAGAGGGCATGGTTGGCCTTGCTGCCCCTGTGCCTTACTGCAGAGCGTCTCCTGCAGGGGGAAGCTCAACCTTACAGACACCTCAGACTGGTCCACATCCTCTGTATTCAAAGTCTCGACTTCTAGCTGGTTCAGAAGCGGATGGAAAGCCTGCTCTTCCACAGGCAGCAGCTGATTTGAAGCAGCTGTGATGATGTCTTCATACCTGGTCTCAGTCTGGGTCTGACCTCTGACCAGCAGGTTAGCCACAGCGAGCAAGAGGAGAGATCTCACCAGAGCCTTCATCTTCATGTCTGATTCCAACTCTGAGAACCACC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU843296 lncRNA upstream 31311 71680489 ~ 71682417 (+) False atg9b
TU843295 lncRNA upstream 31432 71679026 ~ 71682296 (+) False atg9b
TU843297 lncRNA upstream 31432 71680489 ~ 71682296 (+) True atg9b
TU843330 lncRNA upstream 60294 71653206 ~ 71653434 (+) True G742854
TU843329 lncRNA upstream 60893 71652483 ~ 71652835 (+) True G742853
TU843014 lncRNA downstream 118011 71833627 ~ 71837764 (+) True G742573
TU843397 lncRNA downstream 128175 71843791 ~ 71844084 (+) True G742904
TU843460 lncRNA downstream 216911 71932527 ~ 71934937 (+) True wnt9a
TU844189 lncRNA downstream 221815 71937431 ~ 71937872 (+) True G743613
TU844206 lncRNA downstream 232075 71947691 ~ 71947980 (+) True G743630
XM_021613582.2 mRNA upstream 31430 71659108 ~ 71682298 (+) False atg9b
XM_036986126.1 mRNA upstream 31430 71660063 ~ 71682298 (+) False atg9b
XM_021613578.2 mRNA upstream 73473 71608199 ~ 71640255 (+) False asic1c
XM_021613575.2 mRNA upstream 77616 71608199 ~ 71636112 (+) False asic1c
XR_005052942.1 mRNA downstream 12172 71727788 ~ 71805597 (+) False LOC110530483
XM_036986127.1 mRNA downstream 12172 71727788 ~ 71818121 (+) False LOC110530483
XM_036986128.1 mRNA downstream 12172 71727788 ~ 71818121 (+) False LOC110530483
XM_036986129.1 mRNA downstream 12172 71727788 ~ 71818121 (+) False LOC110530483
XM_036986130.1 mRNA downstream 12172 71727788 ~ 71818121 (+) False LOC110530483
TU843350 other upstream 7186 71695602 ~ 71706542 (+) False G742860
TU842479 other upstream 1086984 70626221 ~ 70626744 (+) True G742095
TU841127 other upstream 2175452 69536400 ~ 69538276 (+) True G740827
TU839922 other upstream 2708612 69004337 ~ 69005116 (+) True G739708
TU839882 other upstream 2806763 68903365 ~ 68906965 (+) True G739670
TU844903 other downstream 827110 72542726 ~ 72555556 (+) False LOC110530976
TU844905 other downstream 827110 72542726 ~ 72555556 (+) False LOC110530976
TU844912 other downstream 827110 72542726 ~ 72555556 (+) False LOC110530976
TU844909 other downstream 835760 72551376 ~ 72555556 (+) True LOC110530976
TU844866 other downstream 919268 72634884 ~ 72642738 (+) True LOC110530502

Expression Profile