RNA id: TU843014


Basic Information

Item Value
RNA id TU843014
length 3122
lncRNA type antisense_over
GC content 0.40
exon number 5
gene id G742573
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 71833627 ~ 71837764 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTCTCTAATCACTTTAATTACAGTGCTTTTCTCCaaaaaattaaagctgaaataactttacaaaaaaaaaagtttagaCAAAAGTTCTGCTAAAGAGATTAACGTTTCAACAAAAGGTTCAGGCAATCAGTTTTAATCCAATGCCTTGCTTTAAAAGAAAGACTAAGAAATGTCCATAGCACTCTGGTGGAATAACACCCAGAACCTTTTGATAAGAAGCACAAAAGGTTGTAATGGAACAGCATGTTTCTTTGACATGAGGACAAAAGTATCCCCCCAGAACTTAGCCAAGGACAACATGAGCTACGAAGGACAAAAAAATACTAGTGCCCACTAAGTAAAAAATATGGAGTTCATACATTTCCTATTGCCACTGACATTGATGCATGCCTTGTTCCAAAACTATTAATATACTTGAATCATTCCCAATAAAAAGGGATGAAAACAAGGTCTTCAGGTCATGATGGAGGACATCAGAATTCAGAATACAACTGCTTTTGTCATATCAGAGCATCATACAGCATATACCTTCGAGTGCAGGGGTAAACAACCAGGTGTCTGCGATGGGGGTTCAATGTTTTTATGAATATCGCTAGCAACAGACTAAACACATTTTGAATGACATACCTACAGTAGAAAAGAGGAAAATATCTTATTTCTCATGATGTCAACTTTATTTCTCCACTACTAATATTGAACaaattacactcactggagtatCTGACATTGGCTTTGAAAAATAGGCTACCAGTGTGGTAAGTGCTACTGGCTGCTGGTAAGTGTTCTTGACTTGGACATACATTTTTGCCAACCCATGGATAGCAAGCTAAACAGTTGCGCTTAGCGAAAGTGTTTGCAGTTAGCCTATTAGCTAGAAAGGtatgttagagtttacacttcctcttccaattatAAATGTGGGGAGGTCAAACTAATGAAAAAACATTTACCAAATCTATtaatttcaaaatgttttgaatACTTCGCCTTGACATTCACCTGATAGGACATgaggaaaaaaatgttttggctAACATAATGGGAGTCCCTGGTTCAGTGGTTTGCCTGGAAGGGGGAAAGATAAGGTTGAAGACCCCTGAGTTACAAGGTTGTTGTGGCGCTAAGTCATTGTGATGGTGATGTTGAGGACATCAAGGTATCCCAACCCTTGAGCACCTGCAGCTGACAAGAGTAATGACAATGCttatttagacaaaaatgttTAACAATCAATTAGATAGTCCCGCTGACAATCAACGTGTTCGAGATATTCGATTCTGCACAGAACATGGATTATAGCAAATGGATAGGCAGGAATTCTGCTTCTCTAGGCATTGTGAAAATCTGTTGATTTGCACAGAATCTGTGTGTCTTAAACATGCATTTGTCCAACATACAGACCACATCATGCACTTTTTTTGCTATTAAATTCAGGCTCACTGCGACAAGGGCAGTACACATGATTATTAACCTGAGCCACTTTCATACATCATAATGCTGACCAGACAGTACCTCTGTCCATCACAAAGCAGGTGAATGATGAGATTCATGGAGGAACATAGTTACTCTGCATGGCAGCCACTTCTCAACGAAAGCCAACATGATCTGACAAACAACAAAAGCCGGTAAGTGTCGACAAGAGTTTGACTTTGAAGCCCACTAACCTGTTTTAGGCTTCATCTCAATAATATGCTCTTCAGTGTTTTGCTAAATGGTATTTTGGGGGAGCAGGATATTGTAGCCGTCAGAGGTGTTAAACCATAATTGTTGAAAGTTGTACATCTGTATGTATGCTTAATTCAGGAGAAACACTCCTTTCAGTAAAAATTACCAGCAGACTTATGTAAAAAAGTCAATAAACATAGGGTCCCATCAATTATTTTTTGCCTCCCTTTTCTATTTACTAGACATGCATGTCTGCCCAAGGGTCAAGAGGAGGAAATAACCAAGGTAGATTTTTAAAAGTCTGCAATAAGCTGCCTCTTAAACCCCTCACCATCCAAAACAAGACTATTTACATTAAATaagaaacccagacagctttcCATGATTGGGTTATTATCCTCCCTGGCCCATATGGTGTATTGTTGTAACGAGAGATGAGAAATGAGGGCAGCTTTCCAGTAGGTACTTTTGACAAAAGTAACTTAATTTTCAACATCAGAAGAGTACAAAGCAAAGATAGAGAAGATACAGTGTTAcacttttcacactactgagccgagCCAAACTGAGACGAGCAGAGCTGTACTGCGCCAGCAGGGCTGTACTGCGCCAGCCTGGTAACTCTTCTACCACACAGTTGCTAGAACCATGCAGGAAAGGACAACGTGAAAGAAAATCATCTGAGCCACCGTACGGTTTGAGTCAGCACGATAGAGTGAAAAGGGTATATGTGAGTTGAGGAGGACAGTGGATTATGATGATTAGGCCTATTTCTGGTTTTTTAACTGATTAGACAACCAATCCAGTCCTTCATAGAGACCGTCTCCGCTGGTGGCACAGGTGGCCTGGATGTACCAGTTTCTATGGCGGAGGGAGTGCAGTCCCAACTTGTCTGTGAGTTCGGCCGCATTCATAGCATTTGGGAGGTCCTGTTTGTTAGCGAATACTAATAAGACTGCCTCTCGTAGTTCATCCTCTGCCAACATTCTCATCAGTTCTTCGCGGGCTTCGTTCACTCGCTCTCTGTCATTGCTGTCCACAACAAAGATGAGACCCTGTGTGTTCTGGAAATAGTGACGCCACAACGGTCTAATTTTGTCTTGACCACCGACATCCCACACTGTAAAACTTATGTTCTTGTACTCGACTGTCTCAACATTAAAACCTATAGTTGGAATGGTAGTTACAATTTCTCCAAGTTTGagtttgtacaggattgttgtttTACCAGCAGCATCGAGACCCACCATGAGGATCCTCATCTCTTTCTTGCCAAATGCTTTAAAGAGGCTTGCAAATAAATTCCCCATAGTGAAAGACGGATTCAACTTTGGCAGTAGGAATAAGTTGTTTTCAATTCTTTCCTCTTTAAGGCGTTTCCTTCCTCAAGATGTCGGGTTATTATTTGGCCACGTCAGAGCTTCCAGAACGACTTCCGTGAAACAGAGCGTTTGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU843341 lncRNA upstream 118011 71706303 ~ 71715616 (+) False G742860
TU843296 lncRNA upstream 151210 71680489 ~ 71682417 (+) False atg9b
TU843295 lncRNA upstream 151331 71679026 ~ 71682296 (+) False atg9b
TU843297 lncRNA upstream 151331 71680489 ~ 71682296 (+) True atg9b
TU843330 lncRNA upstream 180193 71653206 ~ 71653434 (+) True G742854
TU843397 lncRNA downstream 6027 71843791 ~ 71844084 (+) True G742904
TU843460 lncRNA downstream 94763 71932527 ~ 71934937 (+) True wnt9a
TU844189 lncRNA downstream 99667 71937431 ~ 71937872 (+) True G743613
TU844206 lncRNA downstream 109927 71947691 ~ 71947980 (+) True G743630
TU844207 lncRNA downstream 110648 71948412 ~ 71948695 (+) True G743631
XM_021613612.2 mRNA upstream 1071 71828037 ~ 71832556 (+) True c8h1orf35
XM_036986127.1 mRNA upstream 15506 71727788 ~ 71818121 (+) False LOC110530483
XM_036986128.1 mRNA upstream 15506 71727788 ~ 71818121 (+) False LOC110530483
XM_036986129.1 mRNA upstream 15506 71727788 ~ 71818121 (+) False LOC110530483
XM_036986130.1 mRNA upstream 15506 71727788 ~ 71818121 (+) False LOC110530483
XM_021613613.2 mRNA downstream 69795 71907559 ~ 71933861 (+) False wnt9a
XM_036986150.1 mRNA downstream 259628 72097392 ~ 72102520 (+) False LOC110530489
XR_005052944.1 mRNA downstream 259628 72097392 ~ 72102520 (+) False LOC110530489
XM_021613631.2 mRNA downstream 308589 72146353 ~ 72155430 (+) False LOC110530494
XM_021613633.2 mRNA downstream 313550 72151314 ~ 72155430 (+) False LOC110530494
TU843344 other upstream 118011 71704643 ~ 71715616 (+) False G742860
TU843351 other upstream 118011 71704643 ~ 71715616 (+) False G742860
TU843343 other upstream 118011 71713728 ~ 71715616 (+) True G742860
TU843350 other upstream 127085 71695602 ~ 71706542 (+) False G742860
TU842479 other upstream 1206883 70626221 ~ 70626744 (+) True G742095
TU844903 other downstream 704962 72542726 ~ 72555556 (+) False LOC110530976
TU844905 other downstream 704962 72542726 ~ 72555556 (+) False LOC110530976
TU844912 other downstream 704962 72542726 ~ 72555556 (+) False LOC110530976
TU844909 other downstream 713612 72551376 ~ 72555556 (+) True LOC110530976
TU844866 other downstream 797120 72634884 ~ 72642738 (+) True LOC110530502

Expression Profile