RNA id: TU844206


Basic Information

Item Value
RNA id TU844206
length 290
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G743630
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 71947691 ~ 71947980 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccgaggaacttaaaacttactaccctctccactactgtcccgtcgatgtgcaCAGggcggtgctccctctgctgtttcctgaagtccacgatcatctcctttgttttgttgacgttgagtgtgaggttattttcctgacaacacactccgagggccctcacctcctccctgtaggccgtctcgtcgttgttggtaatcaagcctaccactgtagtgttgtctgcaaacttaatgattgagttggaggcgtgcatggccacgcagtcatgggtgaacagggagtacaagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU844189 lncRNA upstream 9819 71937431 ~ 71937872 (+) True G743613
TU843460 lncRNA upstream 12754 71932527 ~ 71934937 (+) True wnt9a
TU843397 lncRNA upstream 103607 71843791 ~ 71844084 (+) True G742904
TU843014 lncRNA upstream 109927 71833627 ~ 71837764 (+) True G742573
TU843341 lncRNA upstream 232075 71706303 ~ 71715616 (+) False G742860
TU844207 lncRNA downstream 432 71948412 ~ 71948695 (+) True G743631
TU844209 lncRNA downstream 1103 71949083 ~ 71949294 (+) True G743633
TU844223 lncRNA downstream 11614 71959594 ~ 71960167 (+) True G743647
TU844264 lncRNA downstream 38343 71986323 ~ 71986537 (+) True G743688
TU844294 lncRNA downstream 63161 72011141 ~ 72015844 (+) True G743718
XM_021613613.2 mRNA upstream 13830 71907559 ~ 71933861 (+) False wnt9a
XM_021613612.2 mRNA upstream 115135 71828037 ~ 71832556 (+) True c8h1orf35
XM_036986144.1 mRNA upstream 129570 71727788 ~ 71818121 (+) False LOC110530483
XM_036986150.1 mRNA downstream 149412 72097392 ~ 72102520 (+) False LOC110530489
XR_005052944.1 mRNA downstream 149412 72097392 ~ 72102520 (+) False LOC110530489
XM_021613631.2 mRNA downstream 198373 72146353 ~ 72155430 (+) False LOC110530494
XM_021613633.2 mRNA downstream 203334 72151314 ~ 72155430 (+) False LOC110530494
XM_036986151.1 mRNA downstream 203930 72151910 ~ 72155430 (+) False LOC110530494
TU843344 other upstream 232075 71704643 ~ 71715616 (+) False G742860
TU843351 other upstream 232075 71704643 ~ 71715616 (+) False G742860
TU843343 other upstream 232075 71713728 ~ 71715616 (+) True G742860
TU843350 other upstream 241149 71695602 ~ 71706542 (+) False G742860
TU842479 other upstream 1320947 70626221 ~ 70626744 (+) True G742095
TU844903 other downstream 594746 72542726 ~ 72555556 (+) False LOC110530976
TU844905 other downstream 594746 72542726 ~ 72555556 (+) False LOC110530976
TU844912 other downstream 594746 72542726 ~ 72555556 (+) False LOC110530976
TU844909 other downstream 603396 72551376 ~ 72555556 (+) True LOC110530976
TU844866 other downstream 686904 72634884 ~ 72642738 (+) True LOC110530502

Expression Profile