RNA id: TU844264


Basic Information

Item Value
RNA id TU844264
length 215
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G743688
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 71986323 ~ 71986537 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAGAAAGAGATTTAAGAATGTGGCCTCAGTCTTGGCACAAATATGGAAGACAGTCACGAACCGAATGTGGGCAATAAACAACAAGTCAAGCAAATGTACACTTCACATGCAACACTTATCCATAATGTTTCAGCTTACTTTCCCCCTTTCTCAGTCAGTTACACTAGGATTTGTCTTAGAAAAACGATAAGACAAATAAAGTATGTGTACATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU844223 lncRNA upstream 26156 71959594 ~ 71960167 (+) True G743647
TU844209 lncRNA upstream 37029 71949083 ~ 71949294 (+) True G743633
TU844207 lncRNA upstream 37628 71948412 ~ 71948695 (+) True G743631
TU844206 lncRNA upstream 38343 71947691 ~ 71947980 (+) True G743630
TU844189 lncRNA upstream 48451 71937431 ~ 71937872 (+) True G743613
TU844294 lncRNA downstream 24604 72011141 ~ 72015844 (+) True G743718
TU844322 lncRNA downstream 43875 72030412 ~ 72076863 (+) True G743745
TU844357 lncRNA downstream 83416 72069953 ~ 72079793 (+) True G743779
TU844365 lncRNA downstream 94200 72080737 ~ 72081135 (+) True G743787
TU844382 lncRNA downstream 111108 72097645 ~ 72103866 (+) False LOC110530489
XM_021613613.2 mRNA upstream 52462 71907559 ~ 71933861 (+) False wnt9a
XM_021613612.2 mRNA upstream 153767 71828037 ~ 71832556 (+) True c8h1orf35
XM_036986144.1 mRNA upstream 168202 71727788 ~ 71818121 (+) False LOC110530483
XM_036986150.1 mRNA downstream 110855 72097392 ~ 72102520 (+) False LOC110530489
XR_005052944.1 mRNA downstream 110855 72097392 ~ 72102520 (+) False LOC110530489
XM_021613631.2 mRNA downstream 159816 72146353 ~ 72155430 (+) False LOC110530494
XM_021613633.2 mRNA downstream 164777 72151314 ~ 72155430 (+) False LOC110530494
XM_036986151.1 mRNA downstream 165373 72151910 ~ 72155430 (+) False LOC110530494
TU843344 other upstream 270707 71704643 ~ 71715616 (+) False G742860
TU843351 other upstream 270707 71704643 ~ 71715616 (+) False G742860
TU843343 other upstream 270707 71713728 ~ 71715616 (+) True G742860
TU843350 other upstream 279781 71695602 ~ 71706542 (+) False G742860
TU842479 other upstream 1359579 70626221 ~ 70626744 (+) True G742095
TU844903 other downstream 556189 72542726 ~ 72555556 (+) False LOC110530976
TU844905 other downstream 556189 72542726 ~ 72555556 (+) False LOC110530976
TU844912 other downstream 556189 72542726 ~ 72555556 (+) False LOC110530976
TU844909 other downstream 564839 72551376 ~ 72555556 (+) True LOC110530976
TU844866 other downstream 648347 72634884 ~ 72642738 (+) True LOC110530502

Expression Profile