RNA id: TU844357


Basic Information

Item Value
RNA id TU844357
length 437
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G743779
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 72069953 ~ 72079793 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctccagcatcttcacaaggtcctctgttgttgttctgggatttatttgcacctttcacaccaaagtacattcatctctaggagacagaacgatatagcactcgttttactgttgatatagatacttttgtacccgtttcttcCAGTATCTTCACAATTTTCTGTCATTTTtcaagctgttgaaaggcacagtcaacttagtgtatgtaaacttctgacccactgatacagtgaattataagtgaaatcagtctgtaaacaattgttggaaaaattacttgtgtcatgcacaaagtaaatgtcctaacggacttgccaaaactatagtttgttaacaagaaatgtgtggagtgattgaaaaacaagttttaatgactccaaactaagtgtatgtaaacttccgacttcaaatgtaaatcagacagtgtcaccagaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU844294 lncRNA upstream 54109 72011141 ~ 72015844 (+) True G743718
TU844264 lncRNA upstream 83416 71986323 ~ 71986537 (+) True G743688
TU844223 lncRNA upstream 109786 71959594 ~ 71960167 (+) True G743647
TU844209 lncRNA upstream 120659 71949083 ~ 71949294 (+) True G743633
TU844207 lncRNA upstream 121258 71948412 ~ 71948695 (+) True G743631
TU844365 lncRNA downstream 944 72080737 ~ 72081135 (+) True G743787
TU844382 lncRNA downstream 17852 72097645 ~ 72103866 (+) False LOC110530489
TU844383 lncRNA downstream 17852 72097645 ~ 72103866 (+) True LOC110530489
TU844369 lncRNA downstream 59186 72138979 ~ 72139484 (+) True G743791
TU844402 lncRNA downstream 60538 72140331 ~ 72140976 (+) False G743813
XM_021613613.2 mRNA upstream 136092 71907559 ~ 71933861 (+) False wnt9a
XM_021613612.2 mRNA upstream 237397 71828037 ~ 71832556 (+) True c8h1orf35
XM_036986144.1 mRNA upstream 251832 71727788 ~ 71818121 (+) False LOC110530483
XM_036986150.1 mRNA downstream 17599 72097392 ~ 72102520 (+) False LOC110530489
XR_005052944.1 mRNA downstream 17599 72097392 ~ 72102520 (+) False LOC110530489
XM_021613631.2 mRNA downstream 66560 72146353 ~ 72155430 (+) False LOC110530494
XM_021613633.2 mRNA downstream 71521 72151314 ~ 72155430 (+) False LOC110530494
XM_036986151.1 mRNA downstream 72117 72151910 ~ 72155430 (+) False LOC110530494
TU843344 other upstream 354337 71704643 ~ 71715616 (+) False G742860
TU843351 other upstream 354337 71704643 ~ 71715616 (+) False G742860
TU843343 other upstream 354337 71713728 ~ 71715616 (+) True G742860
TU843350 other upstream 363411 71695602 ~ 71706542 (+) False G742860
TU842479 other upstream 1443209 70626221 ~ 70626744 (+) True G742095
TU844903 other downstream 462933 72542726 ~ 72555556 (+) False LOC110530976
TU844905 other downstream 462933 72542726 ~ 72555556 (+) False LOC110530976
TU844912 other downstream 462933 72542726 ~ 72555556 (+) False LOC110530976
TU844909 other downstream 471583 72551376 ~ 72555556 (+) True LOC110530976
TU844866 other downstream 555091 72634884 ~ 72642738 (+) True LOC110530502

Expression Profile